SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001114395 |
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Gene Symbol: | CNTLN |
Description: | Homo sapiens centlein, centrosomal protein (CNTLN), transcript variant 2, mRNA. |
Gene Location: | chr9(+):17135037-17302049 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.17298705A>G | COSN5120488 | HX31T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3064-3p |
ttgtcaagTGTGGCAgact |
0 | UUGCCACA | m7b | Created | no TS | -0.230000 |
-1.580000 |
|
hsa-miR-4659a-5p |
ttgtcaagtATGGCAGact |
0 | CUGCCAUG | m7a | (m7a->m6b) | NA | NA |
0.630000 |
|
hsa-miR-4769-3p |
ttgtcaagtATGGCAGAct |
0 | UCUGCCAU | m8a | (m8a->m7b) | -0.354000 | -0.161000 | No effect | |
hsa-miR-5590-5p |
ttgtcaagTATGGCAgact |
0 | UUGCCAUA | m7b | Disrupted | -0.197000 | no TS |
-0.490000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.17299181C>T | COSN4925017 | CPCG_0183_Pr_P_P3 | [prostate][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4418 |
ggcggaggtTGCAGTGagc |
2 |
CACUGCAG | m7a | (m6b->m7a) | 0.004000 | 0.004000 |
1.190000 |
|
hsa-miR-4772-3p |
ggcggagGTTGCAGtgagc |
0 | CCUGCAAC | m7b | Created | no TS | -0.026000 |
-2.190000 |
|
hsa-miR-4418 |
ggcggaggtTGCAGTGagc |
0 | CACUGCAG | m7a | (m6b->m7a) | 0.004 | 0.004 |
1.19 |
|
hsa-miR-4772-3p |
ggcggagGTTGCAGtgagc |
0 | CCUGCAAC | m7b | Created | no TS | -0.026 |
-2.19 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.17299905T>A | COSN7560847 | 8052570 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-200b-3p |
tccttCAGTATTtagctgt |
0 | UAAUACUG | m7b | Created | no TS | 0.063000 | No effect | |
hsa-miR-200c-3p |
tccttCAGTATTtagctgt |
0 | UAAUACUG | m7b | Created | no TS | 0.063000 |
-0.060000 |
|
hsa-miR-429 |
tccttCAGTATTtagctgt |
0 | UAAUACUG | m7b | Created | no TS | 0.053000 |
-0.020000 |
|
hsa-miR-548a-3p |
tccttCAGTTTTtagctgt |
2 |
CAAAACUG | m7b | Disrupted | 0.022000 | -0.097000 | No effect | |
hsa-miR-548ac |
tccttcaGTTTTTagctgt |
1 |
CAAAAACC | m6b | Disrupted | 0.358000 | 0.145000 | No effect | |
hsa-miR-548ae |
tccttcAGTTTTTagctgt |
1 |
CAAAAACU | m7b | Disrupted | 0.498000 | 0.148000 |
0.010000 |
|
hsa-miR-548ah-3p |
tccttcAGTTTTTagctgt |
1 |
CAAAAACU | m7b | Disrupted | 0.495000 | 0.145000 |
0.010000 |
|
hsa-miR-548aj-3p |
tccttcAGTTTTTAgctgt |
1 |
UAAAAACU | m8a | Disrupted | 0.498000 | 0.148000 | No effect | |
hsa-miR-548am-3p |
tccttcAGTTTTTagctgt |
1 |
CAAAAACU | m7b | Disrupted | 0.495000 | 0.145000 |
0.010000 |
|
hsa-miR-548aq-3p |
tccttcAGTTTTTagctgt |
1 |
CAAAAACU | m7b | Disrupted | 0.498000 | 0.148000 | No effect | |
hsa-miR-548ar-3p |
tccttCAGTTTTtagctgt |
2 |
UAAAACUG | m7b | Disrupted | 0.032000 | -0.087000 | No effect | |
hsa-miR-548d-3p |
tccttcaGTTTTTagctgt |
1 |
CAAAAACC | m6b | Disrupted | 0.352000 | 0.135000 | No effect | |
hsa-miR-548e |
tccttCAGTTTTTagctgt |
2 |
AAAAACUG | m8a | Disrupted | 0.022000 | -0.097000 |
0.010000 |
|
hsa-miR-548f |
tccttCAGTTTTTagctgt |
2 |
AAAAACUG | m8a | Disrupted | 0.022000 | -0.097000 | No effect | |
hsa-miR-548h-3p |
tccttcaGTTTTTagctgt |
1 |
CAAAAACC | m6b | Disrupted | 0.362000 | 0.145000 | No effect | |
hsa-miR-548x-3p |
tccttcAGTTTTTAgctgt |
1 |
UAAAAACU | m8a | Disrupted | 0.498000 | 0.148000 | No effect | |
hsa-miR-548z |
tccttcaGTTTTTagctgt |
1 |
CAAAAACC | m6b | Disrupted | 0.362000 | 0.145000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.17299983T>A | COSN6383305 | RK119_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4316 |
ttccagGCCTCACtcttag |
0 | GGUGAGGC | m7b | Disrupted | -0.064000 | -0.005000 |
0.070000 |
|
hsa-miR-5586-3p |
ttccaggccTCACTCTtag |
0 | CAGAGUGA | m7b | (m7b->m6c) | 0.024000 | no TS |
0.350000 |
|
hsa-miR-574-5p |
ttccaggcCACACTCttag |
0 | UGAGUGUG | m7b | Created | no TS | 0.017000 |
-1.530000 |
|
hsa-miR-644a |
ttccagGCCACACTcttag |
0 | AGUGUGGC | m8a | Created | no TS | -0.019000 |
-0.350000 |
|
hsa-miR-663b |
ttccaGGCCACactcttag |
0 | GGUGGCCC | m6b | Created | no TS | -0.039000 |
-2.020000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.17300672C>A | COSN5699303 | RK088_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4635 |
tgctctCTTCAAGtccctc |
1 |
UCUUGAAG | m7b | Disrupted | 0.077000 | 0.002000 |
3.740000 |
hsa-miR-4709-3p |
tgctCTCTTCAAgtccctc |
3 |
UUGAAGAG | m8a | Disrupted | 0.060000 | 0.001000 |
2.980000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
17298795 | rs186276984 | A | A |
hsa-miR-640 |
9 |
GGATCAAtatttt |
Disrupted |
N |
-0.145 |
G |
hsa-miR-200b-3p hsa-miR-200c-3p hsa-miR-3151-3p hsa-miR-429 |
8 8 9 8 |
ggatCAGTATTtt ggatCAGTATTtt GGATCAGtatttt ggatCAGTATTtt |
Created Created Created Created |
N N N N |
-0.108 -0.108 -0.295 -0.117 |
|||
17299901 | rs187410389 | C | C |
hsa-miR-1252-5p hsa-miR-548a-3p hsa-miR-548ar-3p hsa-miR-548az-3p hsa-miR-548e-3p hsa-miR-548f-3p |
3 2 2 2 2 2 |
TTCCTTCAgtttt ttccttCAGTTTT ttccttCAGTTTT ttccttCAGTTTT ttccttCAGTTTT ttccttCAGTTTT |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N |
0.097 0.119 0.119 0.119 0.119 0.119 |
T |
hsa-miR-4509 |
3 |
ttCCTTTAGtttt |
Created |
N |
-0.048 |
|||
17299904 | rs192157602 | T | T |
hsa-miR-548a-3p hsa-miR-548ac hsa-miR-548ae hsa-miR-548ah-3p hsa-miR-548aj-3p hsa-miR-548am-3p hsa-miR-548aq-3p hsa-miR-548ar-3p hsa-miR-548az-3p hsa-miR-548d-3p hsa-miR-548e-3p hsa-miR-548f-3p hsa-miR-548h-3p hsa-miR-548j-3p hsa-miR-548x-3p hsa-miR-548z |
2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 |
cttCAGTTTTtag cttcaGTTTTTAg cttcAGTTTTTAg cttcAGTTTTTAg cttcAGTTTTTAg cttcAGTTTTTAg cttcAGTTTTTAg cttCAGTTTTtag cttCAGTTTTtag cttcaGTTTTTAg cttCAGTTTTtag cttCAGTTTTtag cttcaGTTTTTAg cttcAGTTTTTAg cttcAGTTTTTAg cttcaGTTTTTAg |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N N N N N N N N N N |
0.119 0.213 0.35 0.35 0.35 0.35 0.35 0.119 0.119 0.217 0.119 0.119 0.217 0.35 0.35 0.217 |
C |
hsa-miR-320a hsa-miR-320b hsa-miR-320c hsa-miR-320d hsa-miR-4429 hsa-miR-548e-5p |
2 2 2 2 2 2 |
cttCAGCTTTtag cttCAGCTTTtag cttCAGCTTTtag cttCAGCTTTtag cttCAGCTTTtag cttcaGCTTTTAg |
Created Created Created Created Created Created |
N N N N N N |
0.011 0.011 0.011 0.011 0.011 0.147 |
|||
17300410 | rs190599465 | C | C |
hsa-miR-4709-3p |
3 |
atatCTCTTCAct |
Disrupted |
N |
0.001 |
17300489 | rs139297724 | G | G |
hsa-miR-3130-3p hsa-miR-4793-3p hsa-miR-486-5p hsa-miR-500a-3p hsa-miR-6804-3p |
2 2 1 2 2 |
gtacaGGTGCAGA gtacagGTGCAGA GTACAGGtgcaga gtacAGGTGCAga gtaCAGGTGCAga |
Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N |
-0.166 -0.01 -0.038 -0.034 -0.125 |
T |
hsa-miR-2276-3p hsa-miR-4772-3p hsa-miR-891b |
2 2 2 |
gtacagTTGCAGA gtacaGTTGCAGA gtacAGTTGCAga |
Created Created Created |
N N N |
0.028 -0.051 0.001 |