SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_001114395
Gene Symbol: CNTLN
Description: Homo sapiens centlein, centrosomal protein (CNTLN), transcript variant 2, mRNA.
Gene Location: chr9(+):17135037-17302049
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr9:g.17298705A>G COSN5120488 HX31T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3064-3p ttgtcaagTGTGGCAgact
0 UUGCCACA m7b Created no TS -0.230000 -1.580000
hsa-miR-4659a-5p ttgtcaagtATGGCAGact
0 CUGCCAUG m7a (m7a->m6b) NA NA 0.630000
hsa-miR-4769-3p ttgtcaagtATGGCAGAct
0 UCUGCCAU m8a (m8a->m7b) -0.354000 -0.161000 No effect
hsa-miR-5590-5p ttgtcaagTATGGCAgact
0 UUGCCAUA m7b Disrupted -0.197000 no TS -0.490000

Mutation Mutation ID Sample Name Cancer Type
chr9:g.17299181C>T COSN4925017 CPCG_0183_Pr_P_P3 [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4418 ggcggaggtTGCAGTGagc
2
CACUGCAG m7a (m6b->m7a) 0.004000 0.004000 1.190000
hsa-miR-4772-3p ggcggagGTTGCAGtgagc
0 CCUGCAAC m7b Created no TS -0.026000 -2.190000
hsa-miR-4418 ggcggaggtTGCAGTGagc
0 CACUGCAG m7a (m6b->m7a) 0.004 0.004 1.19
hsa-miR-4772-3p ggcggagGTTGCAGtgagc
0 CCUGCAAC m7b Created no TS -0.026 -2.19

Mutation Mutation ID Sample Name Cancer Type
chr9:g.17299905T>A COSN7560847 8052570 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-200b-3p tccttCAGTATTtagctgt
0 UAAUACUG m7b Created no TS 0.063000 No effect
hsa-miR-200c-3p tccttCAGTATTtagctgt
0 UAAUACUG m7b Created no TS 0.063000 -0.060000
hsa-miR-429 tccttCAGTATTtagctgt
0 UAAUACUG m7b Created no TS 0.053000 -0.020000
hsa-miR-548a-3p tccttCAGTTTTtagctgt
2
CAAAACUG m7b Disrupted 0.022000 -0.097000 No effect
hsa-miR-548ac tccttcaGTTTTTagctgt
1
CAAAAACC m6b Disrupted 0.358000 0.145000 No effect
hsa-miR-548ae tccttcAGTTTTTagctgt
1
CAAAAACU m7b Disrupted 0.498000 0.148000 0.010000
hsa-miR-548ah-3p tccttcAGTTTTTagctgt
1
CAAAAACU m7b Disrupted 0.495000 0.145000 0.010000
hsa-miR-548aj-3p tccttcAGTTTTTAgctgt
1
UAAAAACU m8a Disrupted 0.498000 0.148000 No effect
hsa-miR-548am-3p tccttcAGTTTTTagctgt
1
CAAAAACU m7b Disrupted 0.495000 0.145000 0.010000
hsa-miR-548aq-3p tccttcAGTTTTTagctgt
1
CAAAAACU m7b Disrupted 0.498000 0.148000 No effect
hsa-miR-548ar-3p tccttCAGTTTTtagctgt
2
UAAAACUG m7b Disrupted 0.032000 -0.087000 No effect
hsa-miR-548d-3p tccttcaGTTTTTagctgt
1
CAAAAACC m6b Disrupted 0.352000 0.135000 No effect
hsa-miR-548e tccttCAGTTTTTagctgt
2
AAAAACUG m8a Disrupted 0.022000 -0.097000 0.010000
hsa-miR-548f tccttCAGTTTTTagctgt
2
AAAAACUG m8a Disrupted 0.022000 -0.097000 No effect
hsa-miR-548h-3p tccttcaGTTTTTagctgt
1
CAAAAACC m6b Disrupted 0.362000 0.145000 No effect
hsa-miR-548x-3p tccttcAGTTTTTAgctgt
1
UAAAAACU m8a Disrupted 0.498000 0.148000 No effect
hsa-miR-548z tccttcaGTTTTTagctgt
1
CAAAAACC m6b Disrupted 0.362000 0.145000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr9:g.17299983T>A COSN6383305 RK119_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4316 ttccagGCCTCACtcttag
0 GGUGAGGC m7b Disrupted -0.064000 -0.005000 0.070000
hsa-miR-5586-3p ttccaggccTCACTCTtag
0 CAGAGUGA m7b (m7b->m6c) 0.024000 no TS 0.350000
hsa-miR-574-5p ttccaggcCACACTCttag
0 UGAGUGUG m7b Created no TS 0.017000 -1.530000
hsa-miR-644a ttccagGCCACACTcttag
0 AGUGUGGC m8a Created no TS -0.019000 -0.350000
hsa-miR-663b ttccaGGCCACactcttag
0 GGUGGCCC m6b Created no TS -0.039000 -2.020000

Mutation Mutation ID Sample Name Cancer Type
chr9:g.17300672C>A COSN5699303 RK088_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4635 tgctctCTTCAAGtccctc
1
UCUUGAAG m7b Disrupted 0.077000 0.002000 3.740000
hsa-miR-4709-3p tgctCTCTTCAAgtccctc
3
UUGAAGAG m8a Disrupted 0.060000 0.001000 2.980000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table

Location SNP ID Ancestral
Allele
Allele miR ID Conservation miRSite FuncClass Validation context+
score change
17298795 rs186276984 A A hsa-miR-640
9
GGATCAAtatttt
Disrupted
N
-0.145
G hsa-miR-200b-3p
hsa-miR-200c-3p
hsa-miR-3151-3p
hsa-miR-429
8
8
9
8
ggatCAGTATTtt
ggatCAGTATTtt
GGATCAGtatttt
ggatCAGTATTtt
Created
Created
Created
Created
N
N
N
N
-0.108
-0.108
-0.295
-0.117
17299901 rs187410389 C C hsa-miR-1252-5p
hsa-miR-548a-3p
hsa-miR-548ar-3p
hsa-miR-548az-3p
hsa-miR-548e-3p
hsa-miR-548f-3p
3
2
2
2
2
2
TTCCTTCAgtttt
ttccttCAGTTTT
ttccttCAGTTTT
ttccttCAGTTTT
ttccttCAGTTTT
ttccttCAGTTTT
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
N
N
N
N
N
N
0.097
0.119
0.119
0.119
0.119
0.119
T hsa-miR-4509
3
ttCCTTTAGtttt
Created
N
-0.048
17299904 rs192157602 T T hsa-miR-548a-3p
hsa-miR-548ac
hsa-miR-548ae
hsa-miR-548ah-3p
hsa-miR-548aj-3p
hsa-miR-548am-3p
hsa-miR-548aq-3p
hsa-miR-548ar-3p
hsa-miR-548az-3p
hsa-miR-548d-3p
hsa-miR-548e-3p
hsa-miR-548f-3p
hsa-miR-548h-3p
hsa-miR-548j-3p
hsa-miR-548x-3p
hsa-miR-548z
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
cttCAGTTTTtag
cttcaGTTTTTAg
cttcAGTTTTTAg
cttcAGTTTTTAg
cttcAGTTTTTAg
cttcAGTTTTTAg
cttcAGTTTTTAg
cttCAGTTTTtag
cttCAGTTTTtag
cttcaGTTTTTAg
cttCAGTTTTtag
cttCAGTTTTtag
cttcaGTTTTTAg
cttcAGTTTTTAg
cttcAGTTTTTAg
cttcaGTTTTTAg
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
N
0.119
0.213
0.35
0.35
0.35
0.35
0.35
0.119
0.119
0.217
0.119
0.119
0.217
0.35
0.35
0.217
C hsa-miR-320a
hsa-miR-320b
hsa-miR-320c
hsa-miR-320d
hsa-miR-4429
hsa-miR-548e-5p
2
2
2
2
2
2
cttCAGCTTTtag
cttCAGCTTTtag
cttCAGCTTTtag
cttCAGCTTTtag
cttCAGCTTTtag
cttcaGCTTTTAg
Created
Created
Created
Created
Created
Created
N
N
N
N
N
N
0.011
0.011
0.011
0.011
0.011
0.147
17300410 rs190599465 C C hsa-miR-4709-3p
3
atatCTCTTCAct
Disrupted
N
0.001
17300489 rs139297724 G G hsa-miR-3130-3p
hsa-miR-4793-3p
hsa-miR-486-5p
hsa-miR-500a-3p
hsa-miR-6804-3p
2
2
1
2
2
gtacaGGTGCAGA
gtacagGTGCAGA
GTACAGGtgcaga
gtacAGGTGCAga
gtaCAGGTGCAga
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
N
N
N
N
N
-0.166
-0.01
-0.038
-0.034
-0.125
T hsa-miR-2276-3p
hsa-miR-4772-3p
hsa-miR-891b
2
2
2
gtacagTTGCAGA
gtacaGTTGCAGA
gtacAGTTGCAga
Created
Created
Created
N
N
N
0.028
-0.051
0.001

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