SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_000743
Gene Symbol: CHRNA3
Description: Homo sapiens cholinergic receptor, nicotinic, alpha 3 (CHRNA3), transcript variant 1, mRNA.
Gene Location: chr15(-):78887646-78913637
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr15:g.78595498T>C COSN5401157 RK143_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-374b-3p tctccatTGCTAAatgttc
0 CUUAGCAG m6b Created no TS -0.085000 -2.650000
hsa-miR-3908 tctcCATTGCTaaatgttc
3
GAGCAAUG m7b Created -0.210000 -0.492000 -1.660000
hsa-miR-3942-5p tctccATTGCTaaatgttc
0 AAGCAAUA m6b Created no TS -0.079000 -1.103000
hsa-miR-4703-5p tctccATTGCTAaatgttc
0 UAGCAAUA m7a Created no TS -0.086000 -4.840000
hsa-miR-4766-3p tctccATTGCTAaatgttc
0 AUAGCAAU m7b Created no TS -0.204000 -1.740000

Mutation Mutation ID Sample Name Cancer Type
chr15:g.78595799G>T COSN1685135 RK115_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1275 gagagcagaTCCCCCAtgg
1
GUGGGGGA m7b (m6b->m7b) -0.266000 -0.446000 No effect
hsa-miR-3194-3p gagaGCAGAGCccccatgg
0 AGCUCUGC m7b Disrupted -0.151000 no TS 6.000000
hsa-miR-4283 gagagcaGAGCCCCcatgg
0 UGGGGCUC m7b Disrupted -0.184000 no TS 9.060000
hsa-miR-4488 gagagcagaGCCCCCatgg
0 AGGGGGCG m6b Disrupted -0.188000 no TS 14.250000
hsa-miR-4525 gagagcagATCCCCCatgg
0 GGGGGGAU m7b Created -0.405000 -0.710000 -0.030000
hsa-miR-4665-5p gagagcagaTCCCCCAtgg
1
CUGGGGGA m7b (m6b->m7b) -0.257000 -0.427000 No effect
hsa-miR-4686 gagAGCAGATcccccatgg
0 UAUCUGCU m7b (m6c->m7b) no TS -0.038000 -4.130000
hsa-miR-4697-5p gagagcagaGCCCCCatgg
0 AGGGGGCG m6b Disrupted -0.185000 no TS 8.150000
hsa-miR-5010-5p gagagcagATCCCCCatgg
0 AGGGGGAU m7b Created -0.394000 -0.678000 No effect
hsa-miR-625-5p gagagcagaTCCCCCatgg
1
AGGGGGAA m6b Created -0.181000 -0.319000 -0.190000
hsa-miR-760 gagagCAGAGCCcccatgg
0 CGGCUCUG m7b Disrupted -0.106000 no TS No effect
hsa-miR-1275 gagagcagaTCCCCCAtgg
1
GUGGGGGA m7b (m6b->m7b) -0.266000 -0.446000 No effect
hsa-miR-3194-3p gagaGCAGAGCccccatgg
0 AGCUCUGC m7b Disrupted -0.151000 no TS 6.000000
hsa-miR-4283 gagagcaGAGCCCCcatgg
0 UGGGGCUC m7b Disrupted -0.184000 no TS 9.060000
hsa-miR-4488 gagagcagaGCCCCCatgg
0 AGGGGGCG m6b Disrupted -0.188000 no TS 14.250000
hsa-miR-4525 gagagcagATCCCCCatgg
0 GGGGGGAU m7b Created -0.405000 -0.710000 -0.030000
hsa-miR-4665-5p gagagcagaTCCCCCAtgg
1
CUGGGGGA m7b (m6b->m7b) -0.257000 -0.427000 No effect
hsa-miR-4686 gagAGCAGATcccccatgg
0 UAUCUGCU m7b (m6c->m7b) no TS -0.038000 -4.130000
hsa-miR-4697-5p gagagcagaGCCCCCatgg
0 AGGGGGCG m6b Disrupted -0.185000 no TS 8.150000
hsa-miR-5010-5p gagagcagATCCCCCatgg
0 AGGGGGAU m7b Created -0.394000 -0.678000 No effect
hsa-miR-625-5p gagagcagaTCCCCCatgg
1
AGGGGGAA m6b Created -0.181000 -0.319000 -0.190000
hsa-miR-760 gagagCAGAGCCcccatgg
0 CGGCUCUG m7b Disrupted -0.106000 no TS No effect

Mutation Mutation ID Sample Name Cancer Type
chr15:g.78595945G>C COSN9639302 C0091T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-192-5p gaggtccaAGGTCAaggca
2
CUGACCUA m6b Disrupted -0.044000 no TS 0.340000
hsa-miR-215 gaggtccaAGGTCAaggca
2
AUGACCUA m6b Disrupted -0.044000 no TS 0.220000

Mutation Mutation ID Sample Name Cancer Type
chr15:g.78596543C>A COSN1180633 HCC30T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3923 aggctgctTACTAGTaaga
0 AACUAGUA m7b Created no TS -0.277000 No effect
hsa-miR-4476 aggctgCTTCCTagtaaga
1
CAGGAAGG m6b Disrupted -0.069000 no TS 0.230000
hsa-miR-628-3p aggctgcTTACTAGtaaga
0 UCUAGUAA m7b Created no TS -0.110000 -0.010000
hsa-miR-671-5p aggctGCTTCCTagtaaga
0 AGGAAGCC m7a Disrupted NA NA 0.210000
hsa-miR-3923 aggctgctTACTAGTaaga
0 AACUAGUA m7b Created no TS -0.277000 No effect
hsa-miR-4476 aggctgCTTCCTagtaaga
1
CAGGAAGG m6b Disrupted -0.069000 no TS 0.230000
hsa-miR-628-3p aggctgcTTACTAGtaaga
0 UCUAGUAA m7b Created no TS -0.110000 -0.010000
hsa-miR-671-5p aggctGCTTCCTagtaaga
0 AGGAAGCC m7a Disrupted NA NA 0.210000
hsa-miR-3923 aggctgctTACTAGTaaga
0 AACUAGUA m7b Created no TS -0.277000 No effect
hsa-miR-4476 aggctgCTTCCTagtaaga
1
CAGGAAGG m6b Disrupted -0.069000 no TS 0.230000
hsa-miR-628-3p aggctgcTTACTAGtaaga
0 UCUAGUAA m7b Created no TS -0.110000 -0.010000
hsa-miR-671-5p aggctGCTTCCTagtaaga
0 AGGAAGCC m7a Disrupted NA NA 0.210000
hsa-miR-3923 aggctgctTACTAGTaaga
0 AACUAGUA m7b Created no TS -0.277 No effect
hsa-miR-4476 aggctgCTTCCTagtaaga
0 CAGGAAGG m6b Disrupted -0.069 no TS 0.23
hsa-miR-628-3p aggctgcTTACTAGtaaga
0 UCUAGUAA m7b Created no TS -0.11 -0.01
hsa-miR-671-5p aggctGCTTCCTagtaaga
0 AGGAAGCC m7a Disrupted NA NA 0.21

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table

Location SNP ID Ancestral
Allele
Allele miR ID Conservation miRSite FuncClass Validation context+
score change
78595944 rs78211178 G G hsa-miR-192-5p
hsa-miR-215-5p
hsa-miR-6759-3p
hsa-miR-6813-3p
2
2
2
2
tccaAGGTCAAgg
tccaAGGTCAAgg
tccAAGGTCAagg
tCCAAGGTcaagg
Disrupted
Disrupted
Disrupted
Disrupted
N
N
N
N
-0.044
-0.044
-0.062
-0.138
C hsa-miR-27b-5p
hsa-miR-4453
hsa-miR-4538
2
2
2
tccAAGCTCAagg
tCCAAGCTcaagg
tCCAAGCTcaagg
Created
Created
Created
N
N
N
-0.043
-0.094
-0.103
78596354 rs76578031 T T hsa-miR-34b-3p
1
atGTGATTAgtat
Disrupted
N
-0.082
C hsa-miR-3923
1
atgtgACTAGTAt
Created
N
-0.125
78596546 rs201783809 C C hsa-miR-4476
hsa-miR-6828-5p
hsa-miR-6876-5p
1
1
1
aggctgCTTCCTA
aggcTGCTTCCta
aggctgCTTCCTA
Disrupted
Disrupted
Disrupted
N
N
N
-0.069
-0.167
-0.073
T hsa-miR-4261
hsa-miR-4496
1
1
aggcTGTTTCCta
aggctGTTTCCTA
Created
Created
N
N
-0.101
-0.242

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