SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_000743 |
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Gene Symbol: | CHRNA3 |
Description: | Homo sapiens cholinergic receptor, nicotinic, alpha 3 (CHRNA3), transcript variant 1, mRNA. |
Gene Location: | chr15(-):78887646-78913637 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr15:g.78595498T>C | COSN5401157 | RK143_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-374b-3p |
tctccatTGCTAAatgttc |
0 | CUUAGCAG | m6b | Created | no TS | -0.085000 |
-2.650000 |
|
hsa-miR-3908 |
tctcCATTGCTaaatgttc |
3 |
GAGCAAUG | m7b | Created | -0.210000 | -0.492000 |
-1.660000 |
|
hsa-miR-3942-5p |
tctccATTGCTaaatgttc |
0 | AAGCAAUA | m6b | Created | no TS | -0.079000 |
-1.103000 |
|
hsa-miR-4703-5p |
tctccATTGCTAaatgttc |
0 | UAGCAAUA | m7a | Created | no TS | -0.086000 |
-4.840000 |
|
hsa-miR-4766-3p |
tctccATTGCTAaatgttc |
0 | AUAGCAAU | m7b | Created | no TS | -0.204000 |
-1.740000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr15:g.78595799G>T | COSN1685135 | RK115_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1275 |
gagagcagaTCCCCCAtgg |
1 |
GUGGGGGA | m7b | (m6b->m7b) | -0.266000 | -0.446000 | No effect | |
hsa-miR-3194-3p |
gagaGCAGAGCccccatgg |
0 | AGCUCUGC | m7b | Disrupted | -0.151000 | no TS |
6.000000 |
|
hsa-miR-4283 |
gagagcaGAGCCCCcatgg |
0 | UGGGGCUC | m7b | Disrupted | -0.184000 | no TS |
9.060000 |
|
hsa-miR-4488 |
gagagcagaGCCCCCatgg |
0 | AGGGGGCG | m6b | Disrupted | -0.188000 | no TS |
14.250000 |
|
hsa-miR-4525 |
gagagcagATCCCCCatgg |
0 | GGGGGGAU | m7b | Created | -0.405000 | -0.710000 |
-0.030000 |
|
hsa-miR-4665-5p |
gagagcagaTCCCCCAtgg |
1 |
CUGGGGGA | m7b | (m6b->m7b) | -0.257000 | -0.427000 | No effect | |
hsa-miR-4686 |
gagAGCAGATcccccatgg |
0 | UAUCUGCU | m7b | (m6c->m7b) | no TS | -0.038000 |
-4.130000 |
|
hsa-miR-4697-5p |
gagagcagaGCCCCCatgg |
0 | AGGGGGCG | m6b | Disrupted | -0.185000 | no TS |
8.150000 |
|
hsa-miR-5010-5p |
gagagcagATCCCCCatgg |
0 | AGGGGGAU | m7b | Created | -0.394000 | -0.678000 | No effect | |
hsa-miR-625-5p |
gagagcagaTCCCCCatgg |
1 |
AGGGGGAA | m6b | Created | -0.181000 | -0.319000 |
-0.190000 |
|
hsa-miR-760 |
gagagCAGAGCCcccatgg |
0 | CGGCUCUG | m7b | Disrupted | -0.106000 | no TS | No effect | |
hsa-miR-1275 |
gagagcagaTCCCCCAtgg |
1 |
GUGGGGGA | m7b | (m6b->m7b) | -0.266000 | -0.446000 | No effect | |
hsa-miR-3194-3p |
gagaGCAGAGCccccatgg |
0 | AGCUCUGC | m7b | Disrupted | -0.151000 | no TS |
6.000000 |
|
hsa-miR-4283 |
gagagcaGAGCCCCcatgg |
0 | UGGGGCUC | m7b | Disrupted | -0.184000 | no TS |
9.060000 |
|
hsa-miR-4488 |
gagagcagaGCCCCCatgg |
0 | AGGGGGCG | m6b | Disrupted | -0.188000 | no TS |
14.250000 |
|
hsa-miR-4525 |
gagagcagATCCCCCatgg |
0 | GGGGGGAU | m7b | Created | -0.405000 | -0.710000 |
-0.030000 |
|
hsa-miR-4665-5p |
gagagcagaTCCCCCAtgg |
1 |
CUGGGGGA | m7b | (m6b->m7b) | -0.257000 | -0.427000 | No effect | |
hsa-miR-4686 |
gagAGCAGATcccccatgg |
0 | UAUCUGCU | m7b | (m6c->m7b) | no TS | -0.038000 |
-4.130000 |
|
hsa-miR-4697-5p |
gagagcagaGCCCCCatgg |
0 | AGGGGGCG | m6b | Disrupted | -0.185000 | no TS |
8.150000 |
|
hsa-miR-5010-5p |
gagagcagATCCCCCatgg |
0 | AGGGGGAU | m7b | Created | -0.394000 | -0.678000 | No effect | |
hsa-miR-625-5p |
gagagcagaTCCCCCatgg |
1 |
AGGGGGAA | m6b | Created | -0.181000 | -0.319000 |
-0.190000 |
|
hsa-miR-760 |
gagagCAGAGCCcccatgg |
0 | CGGCUCUG | m7b | Disrupted | -0.106000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr15:g.78595945G>C | COSN9639302 | C0091T | [kidney][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-192-5p |
gaggtccaAGGTCAaggca |
2 |
CUGACCUA | m6b | Disrupted | -0.044000 | no TS |
0.340000 |
|
hsa-miR-215 |
gaggtccaAGGTCAaggca |
2 |
AUGACCUA | m6b | Disrupted | -0.044000 | no TS |
0.220000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr15:g.78596543C>A | COSN1180633 | HCC30T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3923 |
aggctgctTACTAGTaaga |
0 | AACUAGUA | m7b | Created | no TS | -0.277000 | No effect |
hsa-miR-4476 |
aggctgCTTCCTagtaaga |
1 |
CAGGAAGG | m6b | Disrupted | -0.069000 | no TS |
0.230000 |
hsa-miR-628-3p |
aggctgcTTACTAGtaaga |
0 | UCUAGUAA | m7b | Created | no TS | -0.110000 |
-0.010000 |
hsa-miR-671-5p |
aggctGCTTCCTagtaaga |
0 | AGGAAGCC | m7a | Disrupted | NA | NA |
0.210000 |
hsa-miR-3923 |
aggctgctTACTAGTaaga |
0 | AACUAGUA | m7b | Created | no TS | -0.277000 | No effect |
hsa-miR-4476 |
aggctgCTTCCTagtaaga |
1 |
CAGGAAGG | m6b | Disrupted | -0.069000 | no TS |
0.230000 |
hsa-miR-628-3p |
aggctgcTTACTAGtaaga |
0 | UCUAGUAA | m7b | Created | no TS | -0.110000 |
-0.010000 |
hsa-miR-671-5p |
aggctGCTTCCTagtaaga |
0 | AGGAAGCC | m7a | Disrupted | NA | NA |
0.210000 |
hsa-miR-3923 |
aggctgctTACTAGTaaga |
0 | AACUAGUA | m7b | Created | no TS | -0.277000 | No effect |
hsa-miR-4476 |
aggctgCTTCCTagtaaga |
1 |
CAGGAAGG | m6b | Disrupted | -0.069000 | no TS |
0.230000 |
hsa-miR-628-3p |
aggctgcTTACTAGtaaga |
0 | UCUAGUAA | m7b | Created | no TS | -0.110000 |
-0.010000 |
hsa-miR-671-5p |
aggctGCTTCCTagtaaga |
0 | AGGAAGCC | m7a | Disrupted | NA | NA |
0.210000 |
hsa-miR-3923 |
aggctgctTACTAGTaaga |
0 | AACUAGUA | m7b | Created | no TS | -0.277 | No effect |
hsa-miR-4476 |
aggctgCTTCCTagtaaga |
0 | CAGGAAGG | m6b | Disrupted | -0.069 | no TS |
0.23 |
hsa-miR-628-3p |
aggctgcTTACTAGtaaga |
0 | UCUAGUAA | m7b | Created | no TS | -0.11 |
-0.01 |
hsa-miR-671-5p |
aggctGCTTCCTagtaaga |
0 | AGGAAGCC | m7a | Disrupted | NA | NA |
0.21 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
78595944 | rs78211178 | G | G |
hsa-miR-192-5p hsa-miR-215-5p hsa-miR-6759-3p hsa-miR-6813-3p |
2 2 2 2 |
tccaAGGTCAAgg tccaAGGTCAAgg tccAAGGTCAagg tCCAAGGTcaagg |
Disrupted Disrupted Disrupted Disrupted |
N N N N |
-0.044 -0.044 -0.062 -0.138 |
C |
hsa-miR-27b-5p hsa-miR-4453 hsa-miR-4538 |
2 2 2 |
tccAAGCTCAagg tCCAAGCTcaagg tCCAAGCTcaagg |
Created Created Created |
N N N |
-0.043 -0.094 -0.103 |
|||
78596354 | rs76578031 | T | T |
hsa-miR-34b-3p |
1 |
atGTGATTAgtat |
Disrupted |
N |
-0.082 |
C |
hsa-miR-3923 |
1 |
atgtgACTAGTAt |
Created |
N |
-0.125 |
|||
78596546 | rs201783809 | C | C |
hsa-miR-4476 hsa-miR-6828-5p hsa-miR-6876-5p |
1 1 1 |
aggctgCTTCCTA aggcTGCTTCCta aggctgCTTCCTA |
Disrupted Disrupted Disrupted |
N N N |
-0.069 -0.167 -0.073 |
T |
hsa-miR-4261 hsa-miR-4496 |
1 1 |
aggcTGTTTCCta aggctGTTTCCTA |
Created Created |
N N |
-0.101 -0.242 |