| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_152854 |
|---|---|
| Gene Symbol: | CD40 |
| Description: | Homo sapiens CD40 molecule, TNF receptor superfamily member 5 (CD40), transcript variant 1, mRNA. |
| Gene Location: | chr20(+):44746905-44758384 |
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| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr20:g.46128927G>A | ICGC_1446639 | TCGA-BS-A0UV-01A-11D-A10B-09 | UterineCorpusEndometrioidCarcinoma(TCGA,US) | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-219-5p |
tttcccGACAATCttcctg |
0 | UGAUUGUC | m7b | Created | no TS | -0.14 |
-0.01 |
| hsa-miR-4699-5p |
tttcccgacAATCTTCctg |
0 | AGAAGAUU | m7b | (m6c->m7b) | no TS | -0.027 |
-2.58 |
| hsa-miR-4782-3p |
tttcccGACAATCttcctg |
0 | UGAUUGUC | m7b | Created | no TS | -0.13 |
-0.52 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr20:g.46129685C>A | ICGC_ssm_v3_148257 | HCC82T | [liver][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-4652-3p |
ggaagggtaAACAGAAaac |
0 | GUUCUGUU | m7b | (m6c->m7b) | -0.168 | -0.325 |
-2.88 |