SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_001759
Gene Symbol: CCND2
Description: Homo sapiens cyclin D2 (CCND2), mRNA.
Gene Location: chr12(+):4382901-4414522
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr12:g.4300135T>A COSN5944130 RK059_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4517 cctagaTCATATTTaaaga
9
AAAUAUGA m8a Disrupted -0.106000 no TS 0.030000
hsa-miR-513a-3p cctagatcAAATTTAaaga
0 UAAAUUUC m7a Created no TS 0.057000 0.100000
hsa-miR-513c-3p cctagatcAAATTTAaaga
0 UAAAUUUC m7a Created no TS 0.057000 0.220000

Mutation Mutation ID Sample Name Cancer Type
chr12:g.4300181G>A COSN14631860 8068539 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1468 tacgaAAACGGAataataa
4
CUCCGUUU m7b Disrupted -0.539000 -0.090000 1.330000
hsa-miR-4652-3p tacgaaAACAGAAtaataa
5
GUUCUGUU m7b Created 0.107000 -0.041000 -0.690000
hsa-miR-4778-5p tacgaaaACAGAATaataa
0 AAUUCUGU m7b Created no TS -0.286000 -0.690000

Mutation Mutation ID Sample Name Cancer Type
chr12:g.4300272T>A COSN8540200 tumor_4120193 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-138-2-3p atgtaaaaGAAATAGtaaa
9
GCUAUUUC m7b Created 0.086000 -0.089000 -0.010000
hsa-miR-5003-3p atgtAAAAGTAatagtaaa
8
UACUUUUC m7a Disrupted 0.011000 0.015000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr12:g.4300443T>A COSN9560818 AOCS-112-1-2 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-106a-3p atgattagATTGCAaagca
13
CUGCAAUG m6b Disrupted -0.156000 -0.083000 0.150000
hsa-miR-33a-5p atgattagAATGCAaagca
5
GUGCAUUG m6b Created -0.138000 -0.214000 -0.550000
hsa-miR-33b-5p atgattagAATGCAaagca
5
GUGCAUUG m6b Created -0.138000 -0.214000 -4.100000
hsa-miR-3680-3p atgattagaATGCAAAgca
1
UUUUGCAU m7b (m6c->m7b) -0.003000 -0.065000 No effect
hsa-miR-450b-5p atgattagaTTGCAAAgca
1
UUUUGCAA m7b (m7b->m6c) -0.063000 0.003000 0.220000
hsa-miR-576-5p atgATTAGAATgcaaagca
3
AUUCUAAU m8a Created 0.054000 0.053000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr12:g.4300537G>T COSN8586184 3765_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-186-3p aaccaTTTGGGatggagaa
2
GCCCAAAG m6b Disrupted -0.088000 -0.066000 0.010000
hsa-miR-4719 aaccATTTGTGAtggagaa
2
UCACAAAU m8a Created 0.188000 0.149000 No effect
hsa-miR-4733-5p aaccatTTGGGATggagaa
2
AAUCCCAA m7b Disrupted -0.094000 no TS 0.010000

Mutation Mutation ID Sample Name Cancer Type
chr12:g.4301396G>T COSN8586185 J87_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-548a-3p tgcaaAGTTTTattcagcg
0 CAAAACUG m6b Created no TS 0.119000 -1.600000
hsa-miR-548e tgcaaAGTTTTattcagcg
0 AAAAACUG m6b Created no TS 0.126000 No effect
hsa-miR-548f tgcaaAGTTTTattcagcg
0 AAAAACUG m6b Created no TS 0.126000 -0.030000
hsa-miR-5582-3p tgcaAAGTTTTAttcagcg
4
UAAAACUU m8a Created 0.500000 0.704000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr12:g.4301632G>T COSN9750202 C0061T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-30a-3p gttgaagACTGAAAacaat
2
CUUUCAGU m7b Created 0.174000 0.365000 -0.020000
hsa-miR-30d-3p gttgaagACTGAAAacaat
2
CUUUCAGU m7b Created 0.165000 0.356000 -0.040000
hsa-miR-30e-3p gttgaagACTGAAAacaat
2
CUUUCAGU m7b Created 0.174000 0.365000 -0.070000
hsa-miR-340-3p gttgaAGACGGAaaacaat
2
UCCGUCUC m7a Disrupted -0.125000 -0.073000 0.460000
hsa-miR-622 gttgaAGACTGaaaacaat
5
ACAGUCUG m6b Created 0.065000 0.103000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr12:g.4301784T>C COSN5834345 SS6003305 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3163 ctgctATTTTATAaacatt
16
UAUAAAAU m8a Disrupted 0.957000 0.672000 -0.060000
hsa-miR-340-5p ctgctatTTTATAAacatt
16
UUAUAAAG m7a Disrupted 0.316000 0.148000 -0.010000

Mutation Mutation ID Sample Name Cancer Type
chr12:g.4302676T>G COSN5322928 RK102_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-192-3p cacactgaATTGGCAGgat
1
CUGCCAAU m8a Disrupted 0.051000 0.032000 0.080000
hsa-miR-4252 cacactgaAGTGGCaggat
0 GGCCACUG m6b Created no TS 0.003000 -0.050000

Mutation Mutation ID Sample Name Cancer Type
chr12:g.4303147A>T COSN9750204 C0035T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1324 tctatttaCTGTCTGtaac
0 CCAGACAG m7b Created no TS -0.039000 -0.040000
hsa-miR-3607-3p tctaTTTACAGTctgtaac
1
ACUGUAAA m8a Disrupted 0.094000 no TS 0.040000
hsa-miR-4494 tctatttaCAGTCTGtaac
8
CCAGACUG m7b Disrupted 0.025000 0.080000 0.030000
hsa-miR-4645-3p tctattTACTGTCTgtaac
0 AGACAGUA m8a Created no TS -0.003000 -0.010000
hsa-miR-499b-5p tctatttacAGTCTGTaac
8
ACAGACUU m7a (m7a->m6b) 0.041000 0.041000 0.020000
hsa-miR-545-5p tctaTTTACTGtctgtaac
13
UCAGUAAA m7b Created 0.075000 0.174000 -0.020000


Mutation Mutation ID Sample Name Cancer Type
chr12:g.4303266G>A COSN9560831 AOCS-150-3-1 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Mutation Mutation ID Sample Name Cancer Type
chr12:g.4303453G>A COSN5716463 HX35T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr12:g.4304147G>T COSN8586187 J30_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-146b-3p aggggACAGGGCtgggaga
5
UGCCCUGU m7b Disrupted -0.138000 -0.145000 No effect
hsa-miR-339-5p agggGACAGGGctgggaga
6
UCCCUGUC m7b Disrupted 0.011000 no TS No effect
hsa-miR-4530 aggggacagTGCTGGGaga
5
CCCAGCAG m7a (m6b->m7a) -0.199000 -0.199000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr12:g.4304373T>C COSN1573871 RK002_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3936 aaagtCCCCTTAagccaac
0 UAAGGGGU m7a Disrupted -0.086000 -0.002000 No effect
hsa-miR-4278 aaagtCCCCCTAagccaac
0 CUAGGGGG m7b Created no TS -0.292000 -1.610000
hsa-miR-4652-5p aaAGTCCCCTtaagccaac
0 AGGGGACU m8a (m8a->m7a) -0.212000 -0.185000 -0.300000
hsa-miR-4716-3p aaagTCCCCCTaagccaac
0 AAGGGGGA m7b Created -0.040000 -0.318000 No effect
hsa-miR-4720-3p aaagtcccCTTAAGCcaac
0 UGCUUAAG m7b Disrupted 0.013000 no TS 0.100000
hsa-miR-5010-5p aaagTCCCCCTaagccaac
0 AGGGGGAU m7a Created -0.022000 -0.022000 -0.370000
hsa-miR-625-5p aaagTCCCCCTaagccaac
0 AGGGGGAA m7a Created 0.000000 0.000000 -0.270000
hsa-miR-3936 aaagtCCCCTTAagccaac
0 UAAGGGGU m7a Disrupted -0.086000 -0.002000 No effect
hsa-miR-4278 aaagtCCCCCTAagccaac
0 CUAGGGGG m7b Created no TS -0.292000 -1.610000
hsa-miR-4652-5p aaAGTCCCCTtaagccaac
0 AGGGGACU m8a (m8a->m7a) -0.212000 -0.185000 -0.300000
hsa-miR-4716-3p aaagTCCCCCTaagccaac
0 AAGGGGGA m7b Created -0.040000 -0.318000 No effect
hsa-miR-4720-3p aaagtcccCTTAAGCcaac
0 UGCUUAAG m7b Disrupted 0.013000 no TS 0.100000
hsa-miR-5010-5p aaagTCCCCCTaagccaac
0 AGGGGGAU m7a Created -0.022000 -0.022000 -0.370000
hsa-miR-625-5p aaagTCCCCCTaagccaac
0 AGGGGGAA m7a Created 0.000000 0.000000 -0.270000
hsa-miR-3936 aaagtCCCCTTAagccaac
0 UAAGGGGU m7a Disrupted -0.086 -0.002 No effect
hsa-miR-4278 aaagtCCCCCTAagccaac
0 CUAGGGGG m7b Created no TS -0.292 -1.61
hsa-miR-4652-5p aaAGTCCCCTtaagccaac
0 AGGGGACU m8a (m8a->m7a) -0.212 -0.185 -0.3
hsa-miR-4716-3p aaagTCCCCCTaagccaac
0 AAGGGGGA m7b Created -0.04 -0.318 No effect
hsa-miR-4720-3p aaagtcccCTTAAGCcaac
0 UGCUUAAG m7b Disrupted 0.013 no TS 0.1
hsa-miR-5010-5p aaagTCCCCCTaagccaac
0 AGGGGGAU m7a Created -0.022 -0.022 -0.37
hsa-miR-625-5p aaagTCCCCCTaagccaac
0 AGGGGGAA m7a Created 0 0 -2.88

Mutation Mutation ID Sample Name Cancer Type
chr12:g.4304549C>T COSN15436502 AOCS-141-8-0 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4668-3p ttctGGATTTTaaacaacc
0 GAAAAUCC m7b Created 0.103000 0.096000 No effect
hsa-miR-4668-3p ttctGGATTTTaaacaacc
0 GAAAAUCC m7b Created 0.103000 0.096000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr12:g.4304664C>A COSN8586188 J30_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-135a-5p agAAGCCATAagcaaatgt
13
UAUGGCUU m8a (m7a->m8a) -0.059000 -0.160000 -0.340000
hsa-miR-135b-5p agAAGCCATAagcaaatgt
13
UAUGGCUU m8a (m7a->m8a) -0.059000 -0.160000 -0.350000
hsa-miR-4502 agaagcCATCAGCaaatgt
0 GCUGAUGA m7a Disrupted NA NA No effect
hsa-miR-628-5p agaagccaTCAGCAaatgt
0 AUGCUGAC m6b Disrupted -0.055000 no TS 0.010000

Mutation Mutation ID Sample Name Cancer Type
chr12:g.4304774C>A COSN4702728 PD4006a [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3617 atccaATGTCTTTtgacag
0 AAAGACAU m8a Disrupted -0.056000 no TS No effect
hsa-miR-641 atccaATGTCTTTtgacag
0 AAAGACAU m8a Disrupted -0.084000 no TS 0.010000

Mutation Mutation ID Sample Name Cancer Type
chr12:g.4304793C>G COSN15563102 AOCS-064-1-6 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1305 gtgcctgtcGTTGAAAAac
12
UUUUCAAC m8a (m7b->m8a) 0.146000 0.057000 No effect
hsa-miR-498 gtgcctgtcCTTGAAAaac
0 UUUCAAGC m7a (m7a->m6b) -0.026000 no TS No effect
hsa-miR-561-5p gtgcctgTCCTTGAaaaac
0 AUCAAGGA m7b Disrupted -0.060000 0.150000 No effect
hsa-miR-95 gtgcctgtCGTTGAAaaac
0 UUCAACGG m7a Created no TS -0.148000 -0.030000
hsa-miR-1305 gtgcctgtcGTTGAAAAac
12
UUUUCAAC m8a (m7b->m8a) 0.146000 0.057000 No effect
hsa-miR-498 gtgcctgtcCTTGAAAaac
0 UUUCAAGC m7a (m7a->m6b) -0.026000 no TS No effect
hsa-miR-561-5p gtgcctgTCCTTGAaaaac
0 AUCAAGGA m7b Disrupted -0.060000 0.150000 No effect
hsa-miR-95 gtgcctgtCGTTGAAaaac
0 UUCAACGG m7a Created no TS -0.148000 -0.030000

Mutation Mutation ID Sample Name Cancer Type
chr12:g.4305136A>G COSN5834346 SS6003305 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-5689 gatcagTGTATGCgaaaag
1
AGCAUACA m7b Disrupted -0.357000 -0.190000 0.050000
hsa-miR-603 gatcAGTGTGTGcgaaaag
0 CACACACU m8a Created 0.026000 -0.112000 -0.070000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table

Location SNP ID Ancestral
Allele
Allele miR ID Conservation miRSite FuncClass Validation context+
score change
4301384 rs141278429 T T hsa-miR-3163
hsa-miR-4282
hsa-miR-95-5p
8
9
6
taATTTTATtgca
tAATTTTAttgca
taatTTTATTGca
Disrupted
Disrupted
Disrupted
N
N
N
0.153
0.194
0.078
C hsa-miR-106a-3p
5
taatttCATTGCA
Created
N
-0.089
4302678 rs3217928 G G hsa-miR-192-3p
hsa-miR-4722-3p
hsa-miR-6727-3p
hsa-miR-6747-3p
7
10
11
15
tgaATTGGCAgga
tgaatTGGCAGGA
tgaatTGGCAGGA
tgaattGGCAGGA
Disrupted
Disrupted
Disrupted
Disrupted
N
N
N
N
0.019
-0.132
-0.132
-0.058
A hsa-miR-370-3p
hsa-miR-4760-3p
hsa-miR-6893-3p
14
6
15
tgaattAGCAGGA
TGAATTAgcagga
tgaattAGCAGGA
Created
Created
Created
N
N
N
-0.031
0.143
-0.041
4302683 rs147247521 G G hsa-miR-4722-3p
hsa-miR-6727-3p
hsa-miR-6747-3p
2
2
3
TGGCAGGAtaaga
TGGCAGGAtaaga
tGGCAGGAtaaga
Disrupted
Disrupted
Disrupted
N
N
N
-0.132
-0.132
-0.058
A hsa-miR-4727-5p
hsa-miR-4769-3p
hsa-miR-4778-5p
hsa-miR-5001-3p
hsa-miR-6738-3p
hsa-miR-6817-5p
2
2
2
3
3
2
TGGCAGAAtaaga
TGGCAGAataaga
tggCAGAATAaga
tGGCAGAAtaaga
tGGCAGAAtaaga
TGGCAGAataaga
Created
Created
Created
Created
Created
Created
N
N
N
N
N
N
-0.118
-0.035
0.081
-0.047
-0.109
-0.042
4303552 rs149766775 T T hsa-miR-625-5p
7
gagttgTTCCCCC
Disrupted
N
0.012
C hsa-miR-1343-5p
hsa-miR-4723-5p
hsa-miR-5698
hsa-miR-6870-5p
hsa-miR-7111-5p
hsa-miR-939-5p
11
7
7
7
7
11
gagttGCTCCCCc
gagttgCTCCCCC
gagttgCTCCCCC
gagttgCTCCCCC
gagttgCTCCCCC
gagttGCTCCCCc
Created
Created
Created
Created
Created
Created
N
N
N
N
N
N
-0.072
-0.031
-0.031
-0.045
-0.045
-0.054
4303821 rs188655271 C C hsa-miR-124-3p
hsa-miR-3714
hsa-miR-3910
hsa-miR-506-3p
2
2
2
2
agcaTGCCTTAct
agcaTGCCTTAct
agcATGCCTTAct
agcaTGCCTTAct
Disrupted
Disrupted
Disrupted
Disrupted
N
N
N
N
0.071
0.067
0.158
0.071
T hsa-miR-3617-5p
hsa-miR-641
2
2
agcATGTCTTAct
agcATGTCTTAct
Created
Created
N
N
0.212
0.244
4304372 rs115254226 C C hsa-miR-3936
hsa-miR-4652-5p
hsa-miR-4720-3p
hsa-miR-6892-5p
13
11
22
16
agtCCCCTTAagc
AGTCCCCttaagc
agtcccCTTAAGC
agtcCCCTTAAgc
Disrupted
Disrupted
Disrupted
Disrupted
N
N
N
N
-0.084
-0.212
0.013
-0.032
G hsa-miR-4804-3p
22
agtcccGTTAAGC
Created
N
0.005
4305047 rs141438670 G G hsa-miR-4802-3p
3
gTCCATGTtattc
Disrupted
N
-0.153
A hsa-miR-4517
hsa-miR-5583-3p
hsa-miR-5692b
hsa-miR-5692c
hsa-miR-8076
3
3
11
11
3
gtcCATATTAttc
gtCCATATTAttc
gtccATATTATtc
gtccATATTATtc
gTCCATATtattc
Created
Created
Created
Created
Created
N
N
N
N
N
-0.008
-0.228
0.061
0.061
-0.153
4305106 rs1049651 G G hsa-miR-4263
hsa-miR-576-5p
3
3
atgTTAGAAAgtg
atgTTAGAAAgtg
Disrupted
Disrupted
N
N
0.015
0.013
A hsa-miR-302c-5p
hsa-miR-3143
hsa-miR-552-5p
3
3
3
ATGTTAAAaagtg
ATGTTAAaaagtg
atGTTAAAAagtg
Created
Created
Created
N
N
N
-0.058
0.006
0.013
4305140 rs182399319 G
A hsa-miR-129-5p
hsa-miR-153-3p
hsa-miR-3680-3p
hsa-miR-448
hsa-miR-450b-5p
hsa-miR-507
hsa-miR-557
hsa-miR-5689
1
0
0
0
0
0
0
1
gtatGCAAAAAgg
gTATGCAAaaagg
gtATGCAAAAagg
gTATGCAAaaagg
gtaTGCAAAAagg
gtaTGCAAAAagg
gtaTGCAAAAagg
GTATGCAaaaagg
Created
Created
Created
Created
Created
Created
Created
Created
N
N
N
N
N
N
N
N
-0.093
-0.11
-0.229
-0.111
-0.059
-0.068
-0.065
-0.165

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