| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_199512 |
|---|---|
| Gene Symbol: | CCDC80 |
| Description: | Homo sapiens coiled-coil domain containing 80 (CCDC80), transcript variant 1, mRNA. |
| Gene Location: | chr3(-):112323408-112359977 |
| Browse Associations | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr3:g.112604570G>A | COSN4810157 | tumor_4160468 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3680-5p |
ataaAGTGAGTCacacaa |
2 |
GACUCACU | m8a | Disrupted | -0.277000 | no TS |
3.500000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr3:g.112604917A>G | COSN9111739 | AOCS-142-3-5 | [ovary][NS][other][neoplasm] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-342-3p |
ctgctttGTGTGAGtttct |
0 | UCUCACAC | m7b | Created | no TS | -0.235000 |
-5.220000 |
| hsa-miR-377-3p |
ctgcttTGTGTGAgtttct |
0 | AUCACACA | m7b | Created | no TS | -0.191000 |
-5.220000 |
| hsa-miR-4666a-3p |
ctgctTTGTATGagtttct |
0 | CAUACAAU | m7a | Disrupted | NA | NA |
0.020000 |
| hsa-miR-4731-3p |
ctgctTTGTGTGagtttct |
0 | CACACAAG | m7a | Created | NA | NA |
1.650000 |
| hsa-miR-485-3p |
ctgcttTGTATGAgtttct |
3 |
GUCAUACA | m7b | Disrupted | -0.151000 | no TS |
0.770000 |
| hsa-miR-520d-5p |
ctgCTTTGTAtgagtttct |
0 | CUACAAAG | m7b | (m7b->m6c) | -0.037000 | no TS |
0.010000 |
| hsa-miR-524-5p |
ctgCTTTGTAtgagtttct |
0 | CUACAAAG | m7b | (m7b->m6c) | -0.037000 | no TS |
0.020000 |
| hsa-miR-539-3p |
ctgcttTGTATGAgtttct |
3 |
AUCAUACA | m7b | Disrupted | -0.160000 | no TS |
0.090000 |