| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_014292 |
|---|---|
| Gene Symbol: | CBX6 |
| Description: | Homo sapiens chromobox homolog 6 (CBX6), mRNA. |
| Gene Location: | chr22(-):39260247-39268258 |
| Browse Associations | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr22:g.38864722C>T | COSN8018665 | 8066467 | [pancreas][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-149-3p |
gccatgggcCCCTCCCTca |
5 |
AGGGAGGG | m8a | (m8a->m7a) | -0.607000 | -0.501000 | No effect |
| hsa-miR-3184-5p |
gccatggGCCCCTCcctca |
0 | UGAGGGGC | m7b | Disrupted | -0.535000 | -0.429000 | No effect |
| hsa-miR-423-5p |
gccatggGCCCCTCcctca |
0 | UGAGGGGC | m7b | Disrupted | -0.558000 | -0.433000 | No effect |
| hsa-miR-4728-5p |
gccatgggcCCCTCCCtca |
5 |
UGGGAGGG | m7b | (m7b->m6b) | -0.607000 | -0.455000 |
0.270000 |
| hsa-miR-765 |
gccatgggCTCCTCCctca |
3 |
UGGAGGAG | m7b | Created | -0.076000 | -0.141000 | No effect |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr22:g.38865632G>A | COSN8612715 | J30_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-138-1-3p |
gcctAAGTAGaccccctat |
2 |
GCUACUUC | m6b | Disrupted | 0.044000 | no TS |
3.520000 |
| hsa-miR-193b-5p |
gcctaagtAAACCCCctat |
0 | CGGGGUUU | m7b | Created | no TS | -0.124000 |
0.040000 |
| hsa-miR-299-5p |
gcctaaGTAAACCccctat |
0 | UGGUUUAC | m7b | Created | no TS | -0.047000 |
-3.590000 |
| hsa-miR-629-5p |
gcctaagTAAACCCcctat |
0 | UGGGUUUA | m7b | Created | no TS | -0.017000 |
-3.850000 |
| hsa-miR-934 |
gcctaAGTAGACcccctat |
2 |
UGUCUACU | m7b | Disrupted | -0.058000 | no TS |
8.430000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr22:g.38865835G>T | COSN15125470 | SM-4B296 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-4283 |
ggcccttagGAGCCCCcca |
0 | UGGGGCUC | m7b | (m7b->m6b) | -0.219000 | -0.076000 |
-0.010000 |
| hsa-miR-4489 |
ggcccttagTAGCCCCcca |
0 | UGGGGCUA | m7b | (m6b->m7b) | -0.096000 | -0.216000 | No effect |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr22:g.38865972G>A | COSN8904882 | SS6003314 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-194-3p |
tagCCCACTGGgtggtttc |
2 |
CCAGUGGG | m8a | Disrupted | -0.134000 | no TS |
0.130000 |
| hsa-miR-3130-5p |
tagcccACTGGGTggtttc |
0 | UACCCAGU | m7b | Disrupted | -0.240000 | -0.118000 |
2.350000 |
| hsa-miR-4482-5p |
tagcccACTGGGTggtttc |
0 | AACCCAGU | m7b | Disrupted | -0.271000 | -0.121000 |
5.240000 |
| hsa-miR-4727-3p |
tagCCCACTAggtggtttc |
0 | AUAGUGGG | m7b | (m6c->m7b) | no TS | -0.158000 |
-1.630000 |