SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_005831
Gene Symbol: CALCOCO2
Description: Homo sapiens calcium binding and coiled-coil domain 2 (CALCOCO2), mRNA.
Gene Location: chr17(+):46908371-46942229
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr17:g.48863159T>A COSN1720837 RK082_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1237 tcactgatCAGAAGGtcac
0 UCCUUCUG m7b Created no TS -0.180000 -0.150000
hsa-miR-3942-3p tcactgATCTGAAggtcac
5
UUUCAGAU m7b Disrupted -0.046000 no TS No effect
hsa-miR-4762-3p tcactgATCAGAAGgtcac
2
CUUCUGAU m8a Created -0.111000 -0.128000 -0.010000
hsa-miR-5100 tcactGATCTGAAggtcac
2
UUCAGAUC m8a Disrupted -0.269000 no TS 1.570000
hsa-miR-5694 tcacTGATCTGaaggtcac
0 CAGAUCAU m7a Disrupted NA NA No effect

Mutation Mutation ID Sample Name Cancer Type
chr17:g.48864238G>A ICGC_8C7615B6-2A78-11E2-96E7-04FD496BB9B8 CPCG_0102_Pr_P_P1 ProstateCancer(OICR,CA)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-548ac aatttttgtGTTTTTagta
0 CAAAAACC m6b Disrupted 0.086 no TS 11.18
hsa-miR-548ae aatttttgtGTTTTTagta
0 CAAAAACU m6b Disrupted 0.07 -0.022 0.19
hsa-miR-548ah-3p aatttttgtGTTTTTagta
0 CAAAAACU m6b Disrupted 0.086 -0.013 0.06
hsa-miR-548am-3p aatttttgtGTTTTTagta
0 CAAAAACU m6b Disrupted 0.086 -0.013 0.41
hsa-miR-548aq-3p aatttttgtGTTTTTagta
0 CAAAAACU m6b Disrupted 0.07 -0.022 0.04
hsa-miR-548c-3p aatttttgtATTTTTagta
0 CAAAAAUC m6b Created no TS 0.151 -0.18
hsa-miR-548d-3p aatttttgtGTTTTTagta
0 CAAAAACC m6b Disrupted 0.103 no TS No effect
hsa-miR-548h-3p aatttttgtGTTTTTagta
0 CAAAAACC m6b Disrupted 0.089 no TS 6.79
hsa-miR-548z aatttttgtGTTTTTagta
0 CAAAAACC m6b Disrupted 0.089 no TS 6.79

Mutation Mutation ID Sample Name Cancer Type
chr17:g.48864335A>T COSN5840532 HCC108T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-2054 agtgctgggATTACAagcg
1
CUGUAAUA m6b Disrupted 0.072000 no TS 0.440000
hsa-miR-30a-5p agtgctggGTTTACAagcg
0 UGUAAACA m7a Created no TS 0.035000 No effect
hsa-miR-30b-5p agtgctggGTTTACAagcg
0 UGUAAACA m7a Created no TS 0.028000 No effect
hsa-miR-30c-5p agtgctggGTTTACAagcg
0 UGUAAACA m7a Created no TS 0.028000 No effect
hsa-miR-30d-5p agtgctggGTTTACAagcg
0 UGUAAACA m7a Created no TS 0.035000 No effect
hsa-miR-30e-5p agtgctggGTTTACAagcg
0 UGUAAACA m7a Created no TS 0.035000 No effect
hsa-miR-4733-5p agtgcTGGGATTacaagcg
0 AAUCCCAA m7a Disrupted NA NA 0.570000
hsa-miR-2054 agtgctgggATTACAagcg
1
CUGUAAUA m6b Disrupted 0.072000 no TS 0.440000
hsa-miR-30a-5p agtgctggGTTTACAagcg
0 UGUAAACA m7a Created no TS 0.035000 No effect
hsa-miR-30b-5p agtgctggGTTTACAagcg
0 UGUAAACA m7a Created no TS 0.028000 No effect
hsa-miR-30c-5p agtgctggGTTTACAagcg
0 UGUAAACA m7a Created no TS 0.028000 No effect
hsa-miR-30d-5p agtgctggGTTTACAagcg
0 UGUAAACA m7a Created no TS 0.035000 No effect
hsa-miR-30e-5p agtgctggGTTTACAagcg
0 UGUAAACA m7a Created no TS 0.035000 No effect
hsa-miR-4733-5p agtgcTGGGATTacaagcg
0 AAUCCCAA m7a Disrupted NA NA 0.570000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Genome Browser