SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_005831 |
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Gene Symbol: | CALCOCO2 |
Description: | Homo sapiens calcium binding and coiled-coil domain 2 (CALCOCO2), mRNA. |
Gene Location: | chr17(+):46908371-46942229 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.48863159T>A | COSN1720837 | RK082_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1237 |
tcactgatCAGAAGGtcac |
0 | UCCUUCUG | m7b | Created | no TS | -0.180000 |
-0.150000 |
hsa-miR-3942-3p |
tcactgATCTGAAggtcac |
5 |
UUUCAGAU | m7b | Disrupted | -0.046000 | no TS | No effect |
hsa-miR-4762-3p |
tcactgATCAGAAGgtcac |
2 |
CUUCUGAU | m8a | Created | -0.111000 | -0.128000 |
-0.010000 |
hsa-miR-5100 |
tcactGATCTGAAggtcac |
2 |
UUCAGAUC | m8a | Disrupted | -0.269000 | no TS |
1.570000 |
hsa-miR-5694 |
tcacTGATCTGaaggtcac |
0 | CAGAUCAU | m7a | Disrupted | NA | NA | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.48864238G>A | ICGC_8C7615B6-2A78-11E2-96E7-04FD496BB9B8 | CPCG_0102_Pr_P_P1 | ProstateCancer(OICR,CA) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-548ac |
aatttttgtGTTTTTagta |
0 | CAAAAACC | m6b | Disrupted | 0.086 | no TS |
11.18 |
hsa-miR-548ae |
aatttttgtGTTTTTagta |
0 | CAAAAACU | m6b | Disrupted | 0.07 | -0.022 |
0.19 |
hsa-miR-548ah-3p |
aatttttgtGTTTTTagta |
0 | CAAAAACU | m6b | Disrupted | 0.086 | -0.013 |
0.06 |
hsa-miR-548am-3p |
aatttttgtGTTTTTagta |
0 | CAAAAACU | m6b | Disrupted | 0.086 | -0.013 |
0.41 |
hsa-miR-548aq-3p |
aatttttgtGTTTTTagta |
0 | CAAAAACU | m6b | Disrupted | 0.07 | -0.022 |
0.04 |
hsa-miR-548c-3p |
aatttttgtATTTTTagta |
0 | CAAAAAUC | m6b | Created | no TS | 0.151 |
-0.18 |
hsa-miR-548d-3p |
aatttttgtGTTTTTagta |
0 | CAAAAACC | m6b | Disrupted | 0.103 | no TS | No effect |
hsa-miR-548h-3p |
aatttttgtGTTTTTagta |
0 | CAAAAACC | m6b | Disrupted | 0.089 | no TS |
6.79 |
hsa-miR-548z |
aatttttgtGTTTTTagta |
0 | CAAAAACC | m6b | Disrupted | 0.089 | no TS |
6.79 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.48864335A>T | COSN5840532 | HCC108T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-2054 |
agtgctgggATTACAagcg |
1 |
CUGUAAUA | m6b | Disrupted | 0.072000 | no TS |
0.440000 |
hsa-miR-30a-5p |
agtgctggGTTTACAagcg |
0 | UGUAAACA | m7a | Created | no TS | 0.035000 | No effect |
hsa-miR-30b-5p |
agtgctggGTTTACAagcg |
0 | UGUAAACA | m7a | Created | no TS | 0.028000 | No effect |
hsa-miR-30c-5p |
agtgctggGTTTACAagcg |
0 | UGUAAACA | m7a | Created | no TS | 0.028000 | No effect |
hsa-miR-30d-5p |
agtgctggGTTTACAagcg |
0 | UGUAAACA | m7a | Created | no TS | 0.035000 | No effect |
hsa-miR-30e-5p |
agtgctggGTTTACAagcg |
0 | UGUAAACA | m7a | Created | no TS | 0.035000 | No effect |
hsa-miR-4733-5p |
agtgcTGGGATTacaagcg |
0 | AAUCCCAA | m7a | Disrupted | NA | NA |
0.570000 |
hsa-miR-2054 |
agtgctgggATTACAagcg |
1 |
CUGUAAUA | m6b | Disrupted | 0.072000 | no TS |
0.440000 |
hsa-miR-30a-5p |
agtgctggGTTTACAagcg |
0 | UGUAAACA | m7a | Created | no TS | 0.035000 | No effect |
hsa-miR-30b-5p |
agtgctggGTTTACAagcg |
0 | UGUAAACA | m7a | Created | no TS | 0.028000 | No effect |
hsa-miR-30c-5p |
agtgctggGTTTACAagcg |
0 | UGUAAACA | m7a | Created | no TS | 0.028000 | No effect |
hsa-miR-30d-5p |
agtgctggGTTTACAagcg |
0 | UGUAAACA | m7a | Created | no TS | 0.035000 | No effect |
hsa-miR-30e-5p |
agtgctggGTTTACAagcg |
0 | UGUAAACA | m7a | Created | no TS | 0.035000 | No effect |
hsa-miR-4733-5p |
agtgcTGGGATTacaagcg |
0 | AAUCCCAA | m7a | Disrupted | NA | NA |
0.570000 |