SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001079670
Gene Symbol: CAB39L
Description: Homo sapiens calcium binding protein 39-like (CAB39L), transcript variant 2, mRNA.
Gene Location: chr13(-):49882785-50018221
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr13:g.49308656C>T COSN6230732 RK308_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1263 taaaaGGTACCAcaca
 2
 AUGGUACC m7b Disrupted -0.345000 no TS 0.050000
hsa-miR-3911 taaaaggtaCCACACa
 1
 UGUGUGGA m6b Disrupted -0.305000 -0.113000 2.430000
hsa-miR-644a taaaaggtaCCACACa
 6
 AGUGUGGC m6b Disrupted -0.203000 no TS 6.750000

Mutation Mutation ID Sample Name Cancer Type
chr13:g.49308941A>C COSN1611432 RK064_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-361-5p ttTCTGATAAagaaaacat
 0 UUAUCAGA m8a (m8a->m7b) -0.292000 -0.159000 0.620000
hsa-miR-3686 tttctgaTACAGAaaacat
 0 AUCUGUAA m6b Created no TS -0.093000 -1.290000
hsa-miR-374a-3p tttCTGATAAagaaaacat
 0 CUUAUCAG m7b (m7b->m6c) -0.221000 0.025000 1.360000
hsa-miR-4652-3p tttctgatACAGAAaacat
 5
 GUUCUGUU m6b Created -0.163000 -0.222000 -0.010000
hsa-miR-4742-3p tttctgATACAGAaaacat
 0 UCUGUAUU m7a Created no TS -0.076000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr13:g.49309443T>C COSN6230733 RK308_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4731-3p agtgTTGTGTagtttttct
 1
 CACACAAG m6b Disrupted 0.010000 no TS 0.190000
hsa-miR-548a-3p agtgttgtgCAGTTTTtct
 1
 CAAAACUG m7b (m6b->m7b) 0.050000 0.101000 -0.110000
hsa-miR-548ar-3p agtgttgtgCAGTTTTtct
 1
 UAAAACUG m7b (m6b->m7b) 0.050000 0.129000 -0.870000
hsa-miR-548av-3p agtgttgtGCAGTTTTtct
 0 AAAACUGC m8a Created no TS -0.095000 -1.670000
hsa-miR-548e agtgttgtgCAGTTTTTct
 1
 AAAAACUG m8a (m7a->m8a) 0.041000 0.083000 -0.290000
hsa-miR-548f agtgttgtgCAGTTTTTct
 1
 AAAAACUG m8a (m7a->m8a) 0.041000 0.083000 -0.300000

Mutation Mutation ID Sample Name Cancer Type
chr13:g.49309679A>G COSN4736158 tumor_4177376 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-449b-3p tctctTGTGGCTaggatga
 1
 CAGCCACA m7b Created -0.113000 -0.280000 -0.300000
hsa-miR-513b tctCTTGTGActaggatga
 1
 UUCACAAG m7b (m7b->m6c) -0.035000 no TS 1.040000

Mutation Mutation ID Sample Name Cancer Type
chr13:g.49309739A>G COSN15037462 LP6005500-DNA_B01 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4679 ttgcccATCACAGtcttta
 2
 UCUGUGAU m7b Disrupted -0.015000 no TS 1.030000

Mutation Mutation ID Sample Name Cancer Type
chr13:g.49309773T>G COSN4900098 CPCG_0183_Pr_P_F0 [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4773 agcaatttTGTTCTaataa
 0 CAGAACAG m6b Created no TS 0.001000 -0.070000
hsa-miR-4773 agcaatttTGTTCTaataa
 0 CAGAACAG m6b Created no TS 0.001 -0.07

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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