SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_001104629 |
---|---|
Gene Symbol: | C4orf19 |
Description: | Homo sapiens chromosome 4 open reading frame 19 (C4orf19), transcript variant 1, mRNA. |
Gene Location: | chr4(+):37455551-37595132 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.37591312A>G | COSN6829943 | RK308_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1911-3p |
tctttgagcGCCTGGTaca |
2 |
CACCAGGC | m7b | (m6c->m7b) | -0.136000 | -0.365000 |
-0.030000 |
|
hsa-miR-3907 |
tctttGAGCACCTggtaca |
2 |
AGGUGCUC | m8a | Disrupted | -0.269000 | no TS |
0.640000 |
|
hsa-miR-4645-5p |
tctttgagcGCCTGGTaca |
0 | ACCAGGCA | m7a | (m6b->m7a) | NA | NA |
-0.160000 |
|
hsa-miR-764 |
tctttgaGCACCTGgtaca |
2 |
GCAGGUGC | m7b | Disrupted | -0.253000 | no TS |
0.520000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.37591889C>T | COSN7489611 | 8051974 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4685-5p |
atcagtgaCCCTGGatgtt |
1 |
CCCAGGGC | m6b | Disrupted | -0.262000 | -0.160000 |
0.410000 |
|
hsa-miR-520a-5p |
atcagtgaCTCTGGAtgtt |
5 |
CUCCAGAG | m7b | Created | -0.070000 | -0.197000 |
-0.510000 |
|
hsa-miR-525-5p |
atcagtgaCTCTGGAtgtt |
5 |
CUCCAGAG | m7b | Created | -0.079000 | -0.216000 |
-0.030000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.37591980G>A | COSN6829944 | RK150_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.37592107C>T | COSN6829945 | RK308_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3150a-5p |
cttggGAGGTTGaggcaag |
0 | CAACCUCG | m7a | Created | NA | NA |
1.080000 |
|
hsa-miR-3150b-5p |
cttggGAGGTTGaggcaag |
0 | CAACCUCG | m7a | Created | NA | NA |
0.290000 |
|
hsa-miR-4714-3p |
cttgggAGGTTGaggcaag |
0 | CCAACCUA | m6b | Created | no TS | 0.019000 |
-0.260000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.37592379G>C | COSN2027580 | RK027_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-142-3p |
aaagagctACACTACAaaa |
0 | UGUAGUGU | m8a | Created | no TS | -0.192000 |
-7.790000 |
|
hsa-miR-4280 |
aaagagCTACACTacaaaa |
0 | GAGUGUAG | m7b | Created | no TS | -0.112000 |
-11.960000 |
|
hsa-miR-142-3p |
aaagagctACACTACAaaa |
0 | UGUAGUGU | m8a | Created | no TS | -0.192000 |
-7.790000 |
|
hsa-miR-4280 |
aaagagCTACACTacaaaa |
0 | GAGUGUAG | m7b | Created | no TS | -0.112000 |
-11.960000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.37592540G>C | COSN9039564 | AOCS-090-1-0 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-218-5p |
tgaaacAAGCACAAccatt |
0 | UUGUGCUU | m8a | Created | no TS | -0.063000 |
-1.920000 |
|
hsa-miR-2355-3p |
tgaaacaAGGACAAccatt |
1 |
AUUGUCCU | m7b | Disrupted | -0.113000 | no TS |
1.420000 |
|
hsa-miR-323b-5p |
tgaaacaagGACAACCatt |
3 |
AGGUUGUC | m7b | (m7b->m6c) | -0.442000 | -0.293000 |
0.780000 |
|
hsa-miR-636 |
tgaaaCAAGCACAaccatt |
0 | UGUGCUUG | m8a | Created | no TS | -0.192000 |
-9.320000 |
|
hsa-miR-676-3p |
tgaaacaAGGACAaccatt |
1 |
CUGUCCUA | m6b | Disrupted | -0.052000 | no TS |
0.980000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.37592754G>T | COSN6829946 | RK122_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3163 |
agaataATTTTATgtgctt |
2 |
UAUAAAAU | m7b | Created | 0.099000 | 0.204000 | No effect | |
hsa-miR-4666a-3p |
agaataATTGTATGtgctt |
1 |
CAUACAAU | m8a | Disrupted | 0.002000 | no TS |
0.010000 |
|
hsa-miR-944 |
agAATAATTTtatgtgctt |
1 |
AAAUUAUU | m8a | (m7a->m8a) | 0.102000 | 0.075000 |
0.090000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.37593228A>G | COSN6829947 | RK214_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-188-3p |
ttcagttgTGTGGGAcgag |
0 | CUCCCACA | m7b | Created | no TS | -0.153000 |
-0.120000 |
|
hsa-miR-4433-5p |
ttcagttgtGTGGGACGag |
0 | CGUCCCAC | m8a | (m7b->m8a) | no TS | -0.282000 |
-3.730000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr4:g.37593281A>G | COSN6829948 | RK219_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4494 |
tgtaaaagaAGTCTGGagt |
0 | CCAGACUG | m7a | (m7a->m6b) | NA | NA |
0.910000 |
hsa-miR-499b-5p |
tgtaaaagAAGTCTGgagt |
6 |
ACAGACUU | m7b | Disrupted | -0.142000 | no TS |
0.090000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
37591840 | rs78927008 | A | A |
hsa-miR-4777-5p hsa-miR-518d-5p hsa-miR-518e-5p hsa-miR-518f-5p hsa-miR-519a-5p hsa-miR-519b-5p hsa-miR-519c-5p hsa-miR-520c-5p hsa-miR-522-5p hsa-miR-523-5p hsa-miR-526a hsa-miR-6505-3p hsa-miR-6508-5p hsa-miR-8067 |
1 1 1 1 1 1 1 1 1 1 1 1 1 1 |
cttTCTAGAAgtc cttTCTAGAAgtc cttTCTAGAAgtc cttTCTAGAAgtc cttTCTAGAAgtc cttTCTAGAAgtc cttTCTAGAAgtc cttTCTAGAAgtc cttTCTAGAAgtc cttTCTAGAAgtc cttTCTAGAAgtc ctttctAGAAGTC cTTTCTAGAagtc cTTTCTAGAagtc |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N N N N N N N N |
-0.026 -0.024 -0.014 -0.024 -0.014 -0.014 -0.014 -0.024 -0.014 -0.014 -0.024 -0.115 -0.018 -0.018 |
G |
hsa-miR-3180-5p hsa-miR-520a-5p hsa-miR-525-5p hsa-miR-617 |
1 1 1 1 |
cttTCTGGAAgtc cttTCTGGAAgtc cttTCTGGAAgtc ctttctGGAAGTC |
Created Created Created Created |
N N N N |
-0.088 -0.057 -0.057 -0.171 |
|||
37592660 | rs181846461 | A | A |
hsa-miR-10b-3p |
4 |
attgaAATCTGAc |
Disrupted |
N |
0.003 |
G |
hsa-miR-4494 hsa-miR-499b-5p |
4 4 |
attgaAGTCTGAc attgAAGTCTGAc |
Created Created |
N N |
-0.046 -0.127 |