SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_173552
Gene Symbol: C3orf58
Description: Homo sapiens chromosome 3 open reading frame 58 (C3orf58), transcript variant 2, mRNA.
Gene Location: chr3(+):143690639-143711210
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr3:g.143990429T>G COSN9132950 AOCS-166-1-2 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Mutation Mutation ID Sample Name Cancer Type
chr3:g.143991285C>T COSN7822417 8050103 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr3:g.143991814A>G COSN1918198 RK035_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3671 ttaTATTTGATaagttttc
 15
 AUCAAAUA m8a Disrupted -0.117000 -0.043000 No effect
hsa-miR-3671 ttaTATTTGATaagttttc
 5
 AUCAAAUA m8a Disrupted -0.117 -0.043 No effect

Mutation Mutation ID Sample Name Cancer Type
chr3:g.143992122A>G COSN1918199 RK056_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4793-5p ttgctatCAGGATGTtcac
 5
 ACAUCCUG m8a Created -0.214000 -0.459000 -0.020000
hsa-miR-4793-5p ttgctatCAGGATGTtcac
 0 ACAUCCUG m8a Created -0.214 -0.459 -0.02

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Genome Browser