SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001256047 |
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Gene Symbol: | C19orf12 |
Description: | Homo sapiens chromosome 19 open reading frame 12 (C19orf12), transcript variant 1, mRNA. |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr19:g.29699033T>C | COSN5850745 | HX31T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3622a-5p |
gcctaaccaCGTGCCTGgt |
0 | CAGGCACG | m8a | (m7a->m8a) | -0.183000 | -0.420000 |
-2.080000 |
hsa-miR-4717-3p |
gcctaaCCATGTGcctggt |
0 | ACACAUGG | m7b | Disrupted | -0.161000 | 0.026000 |
0.660000 |
hsa-miR-5582-5p |
gcctaaccaTGTGCCTggt |
0 | UAGGCACA | m7b | (m7b->m6b) | -0.559000 | -0.357000 |
0.460000 |
hsa-miR-5589-3p |
gcctaacCATGTGCctggt |
0 | UGCACAUG | m7b | Disrupted | -0.450000 | -0.304000 |
1.020000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr19:g.29699190C>T | COSN14988474 | SM-4AX85 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1295a |
cactgcgccCGGCCTAtgt |
0 | UUAGGCCG | m7b | (m7b->m6b) | -0.340000 | -0.118000 |
-0.190000 |
hsa-miR-15a-3p |
cactgcgccTGGCCTatgt |
0 | CAGGCCAU | m6b | Created | no TS | -0.158000 | No effect |
hsa-miR-4755-3p |
cactgcGCCTGGCctatgt |
0 | AGCCAGGC | m7b | Created | -0.007000 | -0.196000 | No effect |
hsa-miR-5704 |
cactgcgccTGGCCTAtgt |
0 | UUAGGCCA | m7b | (m6b->m7b) | -0.100000 | -0.271000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr19:g.29699868A>G | COSN1765034 | RK075_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr19:g.29700097A>T | COSN6141637 | RK183_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-188-5p |
ctgcAGGGATaaatgccca |
0 | CAUCCCUU | m6b | Created | no TS | -0.013000 |
-12.020000 |
hsa-miR-4446-5p |
ctgcAGGGAAAaatgccca |
0 | AUUUCCCU | m7b | Disrupted | 0.114000 | no TS |
0.660000 |
hsa-miR-4729 |
ctgcagggATAAATGccca |
0 | UCAUUUAU | m7b | Created | 0.161000 | 0.430000 |
-3.790000 |
hsa-miR-4755-5p |
ctgcAGGGAAAaatgccca |
0 | UUUCCCUU | m7a | Disrupted | 0.132000 | 0.088000 |
0.310000 |
hsa-miR-5006-3p |
ctgcAGGGAAAaatgccca |
0 | UUUCCCUU | m7a | Disrupted | 0.142000 | 0.098000 |
0.110000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr19:g.29700528T>G | COSN6141638 | RK119_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1286 |
ttcctgctcGTCCTGCAaa |
0 | UGCAGGAC | m8a | (m7a->m8a) | -0.288000 | -0.349000 |
-0.100000 |
hsa-miR-2278 |
ttcCTGCTCTtcctgcaaa |
0 | GAGAGCAG | m7b | (m7b->m6c) | 0.023000 | no TS | No effect |
hsa-miR-4436a |
ttcctgctcGTCCTGCaaa |
0 | GCAGGACA | m7a | (m6a->m7a) | NA | NA |
-0.070000 |
hsa-miR-873-5p |
ttcctgctcTTCCTGCaaa |
0 | GCAGGAAC | m7a | (m7a->m6a) | NA | NA | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr19:g.29700678C>G | COSN9848537 | C0054T | [kidney][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1914-5p |
gtgccctaGCACAGGccac |
0 | CCCUGUGC | m7b | Disrupted | -0.012000 | no TS |
-0.110000 |
hsa-miR-214-5p |
gtgccctagGACAGGCcac |
0 | UGCCUGUC | m7b | (m6b->m7b) | no TS | 0.024000 |
0.140000 |
hsa-miR-5008-3p |
gtgccctAGCACAGGccac |
0 | CCUGUGCU | m8a | Disrupted | 0.030000 | no TS |
0.040000 |
hsa-miR-5571-3p |
gtgcCCTAGGACaggccac |
0 | GUCCUAGG | m8a | Created | no TS | 0.048000 | No effect |
hsa-miR-676-3p |
gtgcccTAGGACAGgccac |
0 | CUGUCCUA | m8a | Created | no TS | 0.132000 |
-1.890000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr19:g.29701734C>T | COSN1765035 | RK066_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1324 |
atagactTGTCTGatgcca |
0 | CCAGACAG | m6b | Created | 0.113000 | 0.100000 |
-2.880000 |
hsa-miR-4269 |
atagactTGCCTGatgcca |
0 | GCAGGCAC | m6b | Disrupted | -0.282000 | -0.240000 | No effect |
hsa-miR-4514 |
atagactTGCCTGatgcca |
0 | ACAGGCAG | m6b | Disrupted | -0.190000 | -0.160000 | No effect |
hsa-miR-4742-5p |
atagacTTGCCTGAtgcca |
0 | UCAGGCAA | m8a | Disrupted | -0.145000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr19:g.29701743A>G | COSN1765036 | RK086_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1271-5p |
tgGTGCCAAGtagacttgc |
0 | CUUGGCAC | m8a | (m7b->m8a) | -0.162000 | -0.068000 |
1.070000 |
hsa-miR-138-1-3p |
tggtgccAAGTAGacttgc |
0 | GCUACUUC | m6b | Created | no TS | 0.036000 | No effect |
hsa-miR-138-2-3p |
tggtgccAAATAGacttgc |
0 | GCUAUUUC | m6b | Disrupted | 0.112000 | no TS |
0.010000 |
hsa-miR-5002-5p |
tggtgCCAAATagacttgc |
0 | AAUUUGGU | m6b | Disrupted | 0.062000 | no TS |
0.070000 |
hsa-miR-934 |
tggtgccaAGTAGACttgc |
0 | UGUCUACU | m7b | Created | no TS | -0.058000 |
0.210000 |
hsa-miR-96-5p |
tgGTGCCAAAtagacttgc |
0 | UUUGGCAC | m8a | (m8a->m7b) | -0.172000 | -0.077000 |
2.900000 |
hsa-miR-1271-5p |
tgGTGCCAAGtagacttgc |
0 | CUUGGCAC | m8a | (m7b->m8a) | -0.162 | -0.068 |
1.07 |
hsa-miR-138-1-3p |
tggtgccAAGTAGacttgc |
0 | GCUACUUC | m6b | Created | no TS | 0.036 | No effect |
hsa-miR-138-2-3p |
tggtgccAAATAGacttgc |
0 | GCUAUUUC | m6b | Disrupted | 0.112 | no TS |
0.01 |
hsa-miR-5002-5p |
tggtgCCAAATagacttgc |
0 | AAUUUGGU | m6b | Disrupted | 0.062 | no TS |
0.07 |
hsa-miR-934 |
tggtgccaAGTAGACttgc |
0 | UGUCUACU | m7b | Created | no TS | -0.058 |
0.21 |
hsa-miR-96-5p |
tgGTGCCAAAtagacttgc |
0 | UUUGGCAC | m8a | (m8a->m7b) | -0.172 | -0.077 |
2.9 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr19:g.29701756A>G | COSN15263066 | LP6007520-DNA_A01 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr19:g.29702430G>A | COSN4967337 | SS6003113 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-127-5p |
gcagGCTTCAGaggcgtct |
0 | CUGAAGCU | m7a | Created | 0.035000 | 0.035000 | No effect |
hsa-miR-1281 |
gcaggcttcGGAGGCGtct |
0 | UCGCCUCC | m7b | (m7b->m6b) | -0.219000 | no TS | No effect |
hsa-miR-146a-3p |
gcaggcTTCAGAGGcgtct |
0 | CCUCUGAA | m8a | Created | -0.030000 | 0.004000 | No effect |
hsa-miR-4671-5p |
gcaggCTTCGGaggcgtct |
0 | ACCGAAGA | m6b | Disrupted | -0.137000 | no TS |
0.040000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr19:g.29702628C>T | COSN15316590 | SNUH_G76_S1 | [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1273g-3p |
gaagccCAGTGGatgcccc |
0 | ACCACUGC | m6b | Created | no TS | -0.088000 | No effect |
hsa-miR-181a-2-3p |
gaagccCAGTGGatgcccc |
0 | ACCACUGA | m6b | Created | no TS | -0.100000 | No effect |
hsa-miR-378g |
gaAGCCCAGTggatgcccc |
0 | ACUGGGCU | m8a | (m7b->m8a) | -0.163000 | -0.191000 | No effect |
hsa-miR-1273g-3p |
gaagccCAGTGGatgcccc |
0 | ACCACUGC | m6b | Created | no TS | -0.088000 | No effect |
hsa-miR-181a-2-3p |
gaagccCAGTGGatgcccc |
0 | ACCACUGA | m6b | Created | no TS | -0.100000 | No effect |
hsa-miR-378g |
gaAGCCCAGTggatgcccc |
0 | ACUGGGCU | m8a | (m7b->m8a) | -0.163000 | -0.191000 | No effect |