| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_001008404 |
|---|---|
| Gene Symbol: | C14orf180 |
| Description: | Homo sapiens chromosome 14 open reading frame 180 (C14orf180), mRNA. |
| Gene Location: | chr14(+):105046055-105056183 |
| Browse Associations | |
| Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
|---|---|---|---|---|---|---|---|---|---|
| chr14:g.104589211A>G | COSN7429702 | 8057528 | [pancreas][NS][carcinoma][NS] | ||||||
| miRNA Targets Table | |||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
| hsa-miR-27a-5p |
aggaggcAAGCCCagcctt |
0 | AGGGCUUA | m6b | Created | no TS | -0.093000 | No effect | |
| hsa-miR-378g |
aggaggcaAGCCCAGcctt |
1 |
ACUGGGCU | m7b | Created | -0.178000 | -0.306000 | No effect | |
| hsa-miR-5087 |
aggaggCAAACCCagcctt |
0 | GGGUUUGU | m7a | Disrupted | NA | NA |
-0.150000 |
|
| hsa-miR-5589-5p |
aggaggcaaACCCAGCCtt |
2 |
GGCUGGGU | m8a | (m8a->m7b) | -0.402000 | -0.230000 |
-0.010000 |
|
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr14:g.104589236G>T | COSN8588014 | 2734_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-4286 |
ttatggcttGTGGGGaatc |
1 |
ACCCCACU | m6b | Disrupted | -0.139000 | no TS |
3.190000 |
| Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
|---|---|---|---|---|---|---|---|---|---|
| 104589344 | rs191863595 | C | C |
hsa-miR-1229-5p hsa-miR-197-5p hsa-miR-3132 hsa-miR-4505 hsa-miR-5589-5p hsa-miR-5787 hsa-miR-6861-5p |
1 1 1 2 2 2 1 |
cccCTACCCAgcc cccCTACCCAgcc cccCTACCCAgcc cccctaCCCAGCC cccctACCCAGCc cccctaCCCAGCC ccccTACCCAGcc |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N |
-0.029 -0.069 -0.062 -0.121 -0.065 -0.159 -0.02 |
| G |
hsa-miR-4794 hsa-miR-5580-5p hsa-miR-6069 hsa-miR-664a-5p |
1 2 1 1 |
ccccTAGCCAGcc cccctAGCCAGCc ccCCTAGCCAgcc ccccTAGCCAGcc |
Created Created Created Created |
N N N N |
0.008 -0.098 -0.223 0.027 |