SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_032352
Gene Symbol: BRMS1L
Description: Homo sapiens breast cancer metastasis-suppressor 1-like (BRMS1L), mRNA.
Gene Location: chr14(+):36295596-36341169
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr14:g.35870675C>T COSN1167234 BN06T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4803 cgatccTTATGTTgatttg
 6
 UAACAUAA m7b Created -0.053000 -0.095000 -0.160000
hsa-miR-4803 cgatccTTATGTTgatttg
 0 UAACAUAA m7b Created -0.053 -0.095 -0.16


Mutation Mutation ID Sample Name Cancer Type
chr14:g.35871235A>G COSN8588597 J74_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr14:g.35871449T>G COSN15545343 AOCS-064-1-6 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-25-3p tgGTGCAATGtagaaagtg
 14
 CAUUGCAC m8a (m7a->m8a) -0.106000 -0.079000 -1.510000
hsa-miR-363-3p tgGTGCAATTtagaaagtg
 14
 AAUUGCAC m8a (m8a->m7a) -0.115000 -0.088000 -0.930000
hsa-miR-367-3p tgGTGCAATTtagaaagtg
 14
 AAUUGCAC m8a (m8a->m7a) -0.125000 -0.098000 -0.430000
hsa-miR-4263 tggtgcaatTTAGAAagtg
 11
 AUUCUAAG m6b Disrupted 0.049000 no TS 4.090000
hsa-miR-4317 tggtGCAATGTagaaagtg
 0 ACAUUGCC m7a Created NA NA -1.080000
hsa-miR-4799-5p tggtgcaATTTAGAaagtg
 9
 AUCUAAAU m7b Disrupted -0.096000 -0.073000 6.950000
hsa-miR-576-5p tggtgcaatTTAGAAagtg
 11
 AUUCUAAU m6b Disrupted 0.043000 no TS 2.230000
hsa-miR-25-3p tgGTGCAATGtagaaagtg
 14
 CAUUGCAC m8a (m7a->m8a) -0.106000 -0.079000 -1.510000
hsa-miR-363-3p tgGTGCAATTtagaaagtg
 14
 AAUUGCAC m8a (m8a->m7a) -0.115000 -0.088000 -0.930000
hsa-miR-367-3p tgGTGCAATTtagaaagtg
 14
 AAUUGCAC m8a (m8a->m7a) -0.125000 -0.098000 -0.430000
hsa-miR-4263 tggtgcaatTTAGAAagtg
 11
 AUUCUAAG m6b Disrupted 0.049000 no TS 4.090000
hsa-miR-4317 tggtGCAATGTagaaagtg
 0 ACAUUGCC m7a Created NA NA -1.080000
hsa-miR-4799-5p tggtgcaATTTAGAaagtg
 9
 AUCUAAAU m7b Disrupted -0.096000 -0.073000 6.950000
hsa-miR-576-5p tggtgcaatTTAGAAagtg
 11
 AUUCUAAU m6b Disrupted 0.043000 no TS 2.230000

Mutation Mutation ID Sample Name Cancer Type
chr14:g.35871862T>C COSN6247519 RK216_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-200b-3p aaaacccaaCAGTATTtga
 14
 UAAUACUG m7b (m6c->m7b) -0.023000 -0.177000 -0.080000
hsa-miR-200c-3p aaaacccaaCAGTATTtga
 14
 UAAUACUG m7b (m6c->m7b) -0.023000 -0.186000 -0.580000
hsa-miR-3147 aaaaCCCAACagtatttga
 0 GGUUGGGC m6b Created no TS -0.202000 No effect
hsa-miR-367-5p aaaaccCAACAGTatttga
 0 ACUGUUGC m7a Created NA NA No effect
hsa-miR-429 aaaacccaaCAGTATTtga
 14
 UAAUACUG m7b (m6c->m7b) -0.023000 -0.177000 -0.010000
hsa-miR-452-5p aaaacccAACAGTatttga
 0 AACUGUUU m6b Created -0.321000 -0.414000 No effect
hsa-miR-4676-3p aaaacccAACAGTatttga
 0 CACUGUUU m6b Created -0.290000 -0.383000 No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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