| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_007300 |
|---|---|
| Gene Symbol: | BRCA1 |
| Description: | Homo sapiens breast cancer 1, early onset (BRCA1), transcript variant 1, mRNA. |
| Gene Location: | chr17(-):41196311-41277500 |
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| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr17:g.43044739G>A | COSN8836839 | AOCS-057-1-2 | [ovary][NS][other][neoplasm] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-4773 |
aaagaatgTGTTCTaaaac |
2 |
CAGAACAG | m6b | Disrupted | -0.085000 | no TS |
0.410000 |
| hsa-miR-5687 |
aaagaatgtGTTCTAAaac |
2 |
UUAGAACG | m7a | (m7a->m6a) | -0.093000 | no TS |
4.880000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr17:g.43044803G>C | COSN7435585 | 8030032 | [pancreas][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3140-3p |
aaaaAAAAGCaaaatgaaa |
0 | AGCUUUUG | m6b | Created | no TS | -0.049000 |
-0.010000 |