SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_007298 |
---|---|
Gene Symbol: | BRCA1 |
Description: | Homo sapiens breast cancer 1, early onset (BRCA1), transcript variant 1, mRNA. |
Gene Location: | chr17(-):41196311-41276132 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.43044739G>A | COSN8836839 | AOCS-057-1-2 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4773 |
aaagaatgTGTTCTaaaac |
2 |
CAGAACAG | m6b | Disrupted | -0.085000 | no TS |
0.410000 |
hsa-miR-5687 |
aaagaatgtGTTCTAAaac |
2 |
UUAGAACG | m7a | (m7a->m6a) | -0.093000 | no TS |
4.880000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.43044803G>C | COSN7435585 | 8030032 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3140-3p |
aaaaAAAAGCaaaatgaaa |
0 | AGCUUUUG | m6b | Created | no TS | -0.049000 |
-0.010000 |