SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_017637 |
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Gene Symbol: | BNC2 |
Description: | Homo sapiens basonuclin 2 (BNC2), mRNA. |
Gene Location: | chr9(-):16409500-16870786 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16409541T>G | ICGC_446035 | TCGA-CA-6717-01A-11D-1835-10 | ColonAdenocarcinoma(TCGA,US) | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3529-3p |
atcaaaaTTGTTGTacaat |
0 | AACAACAA | m7b | Created | 0.098 | -0.228 |
-8.09 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16410644G>A | COSN9703979 | AOCS-163-1-4 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16410958C>G | COSN14691728 | CHC433T | [liver][NS][carcinoma][hepatocellular_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-103a-2-5p |
tgcgAGAAGCatgattcat |
6 |
AGCUUCUU | m6b | Disrupted | 0.106000 | 0.059000 |
0.020000 |
|
hsa-miR-1248 |
tgcgAGAAGGatgattcat |
0 | ACCUUCUU | m6b | Created | 0.165000 | 0.234000 |
-4.650000 |
|
hsa-miR-4793-5p |
tgcgagaAGGATGattcat |
1 |
ACAUCCUG | m6b | Created | -0.026000 | 0.019000 |
-2.090000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16411208C>T | COSN6382988 | RK308_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4676-5p |
attaACTGGCTCtgcccac |
14 |
GAGCCAGU | m8a | Disrupted | -0.155000 | -0.115000 |
0.030000 |
|
hsa-miR-575 |
attaACTGGCTCtgcccac |
14 |
GAGCCAGU | m8a | Disrupted | -0.156000 | -0.116000 |
0.180000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16411465C>A | COSN14684391 | CHC433T | [liver][NS][carcinoma][hepatocellular_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4292 |
tctaaaataCCAGGGatgc |
0 | CCCCUGGG | m6b | Disrupted | -0.047000 | no TS |
0.500000 |
|
hsa-miR-4774-5p |
tctaaaATACCAGggatgc |
0 | UCUGGUAU | m7b | Disrupted | -0.045000 | -0.009000 |
0.050000 |
|
hsa-miR-5681b |
tctaaAATACCagggatgc |
0 | AGGUAUUG | m6b | Disrupted | 0.066000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16411922T>C | COSN4944527 | PD4005a | [breast][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1252 |
agcgtcTTCCTTCTgggac |
9 |
AGAAGGAA | m8a | Created | 0.203000 | 0.335000 |
-0.040000 |
|
hsa-miR-7-5p |
agcGTCTTCCttctgggac |
2 |
UGGAAGAC | m7b | (m6c->m7b) | -0.119000 | -0.101000 |
-0.160000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16412025C>T | COSN14680356 | CHC433T | [liver][NS][carcinoma][hepatocellular_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1269a |
tgccctgAGTCCAaagatt |
0 | CUGGACUG | m6b | Created | no TS | -0.010000 | No effect | |
hsa-miR-1269b |
tgccctgAGTCCAaagatt |
0 | CUGGACUG | m6b | Created | no TS | -0.016000 | No effect | |
hsa-miR-1587 |
tgccctgAGCCCAAagatt |
0 | UUGGGCUG | m7a | Disrupted | -0.077000 | -0.040000 | No effect | |
hsa-miR-24-3p |
tgccCTGAGCCcaaagatt |
0 | UGGCUCAG | m7b | Disrupted | -0.015000 | no TS | No effect | |
hsa-miR-4284 |
tgcccTGAGCCCaaagatt |
0 | GGGCUCAC | m7a | Disrupted | NA | NA | No effect | |
hsa-miR-4437 |
tgcccTGAGCCCAaagatt |
5 |
UGGGCUCA | m8a | Disrupted | -0.087000 | no TS |
2.600000 |
|
hsa-miR-4518 |
tgCCCTGAGCccaaagatt |
2 |
GCUCAGGG | m8a | (m8a->m7b) | -0.018000 | -0.046000 | No effect | |
hsa-miR-4529-3p |
tgccctgAGTCCAAagatt |
18 |
AUUGGACU | m7b | Created | -0.201000 | -0.182000 | No effect | |
hsa-miR-4674 |
tgccctGAGCCCAaagatt |
0 | CUGGGCUC | m7b | Disrupted | -0.167000 | -0.034000 |
0.060000 |
|
hsa-miR-5009-5p |
tgccctgAGTCCAAagatt |
0 | UUGGACUU | m7a | Created | -0.047000 | -0.068000 | No effect | |
hsa-miR-510 |
tgcCCTGAGTccaaagatt |
5 |
UACUCAGG | m7b | (m6c->m7b) | 0.014000 | 0.008000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16412202G>A | COSN9279568 | C0021T | [kidney][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-122-3p |
aaagATGGCGTcaggcttt |
0 | AACGCCAU | m7b | Disrupted | -0.074000 | no TS |
0.300000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16413634T>A | COSN14682773 | CHC433T | [liver][NS][carcinoma][hepatocellular_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1287 |
attgtgtaaATCCAGCtgt |
15 |
UGCUGGAU | m7b | (m6b->m7b) | -0.174000 | -0.222000 |
-0.010000 |
|
hsa-miR-3167 |
attgtgtAAATCCagctgt |
1 |
AGGAUUUC | m6b | Created | 0.261000 | 0.338000 |
-0.270000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16413781C>T | COSN14685438 | CHC433T | [liver][NS][carcinoma][hepatocellular_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3611 |
ttctCTTCACAttttccct |
0 | UUGUGAAG | m7b | Disrupted | -0.022000 | no TS |
0.110000 |
|
hsa-miR-4517 |
ttctctTCATATTTtccct |
19 |
AAAUAUGA | m8a | Created | -0.162000 | -0.052000 |
-0.250000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16414275C>T | COSN6382989 | RK308_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-145-5p |
atgaatgcACTGGAaatgt |
3 |
GUCCAGUU | m6b | Disrupted | 0.020000 | 0.004000 |
0.950000 |
|
hsa-miR-148a-3p |
atgaaTGCACTGgaaatgt |
3 |
UCAGUGCA | m7b | Disrupted | -0.047000 | no TS |
0.090000 |
|
hsa-miR-148b-3p |
atgaaTGCACTGgaaatgt |
3 |
UCAGUGCA | m7b | Disrupted | -0.047000 | no TS |
0.100000 |
|
hsa-miR-152 |
atgaaTGCACTGgaaatgt |
3 |
UCAGUGCA | m7b | Disrupted | -0.047000 | no TS |
0.100000 |
|
hsa-miR-1825 |
atgaatGCACTGGAaatgt |
2 |
UCCAGUGC | m8a | Disrupted | -0.135000 | no TS |
0.090000 |
|
hsa-miR-199a-5p |
atgaatgCACTGGaaatgt |
2 |
CCCAGUGU | m6b | Disrupted | -0.023000 | no TS |
4.160000 |
|
hsa-miR-199b-5p |
atgaatgCACTGGaaatgt |
2 |
CCCAGUGU | m6b | Disrupted | -0.020000 | no TS |
2.550000 |
|
hsa-miR-3180-5p |
atgaatgcaCTGGAAatgt |
1 |
CUUCCAGA | m6b | Disrupted | 0.074000 | no TS |
1.740000 |
|
hsa-miR-5195-3p |
atgaatgcACTGGAaatgt |
3 |
AUCCAGUU | m6b | Disrupted | 0.020000 | 0.004000 | No effect | |
hsa-miR-5700 |
atgaATGCATTggaaatgt |
1 |
UAAUGCAU | m7b | Created | 0.102000 | 0.171000 |
-0.280000 |
|
hsa-miR-586 |
atgAATGCATtggaaatgt |
19 |
UAUGCAUU | m7b | (m6c->m7b) | -0.209000 | -0.136000 |
-0.080000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16414472A>T | COSN2313922 | RK026_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1297 |
cttctcccaTACTTGAAgt |
2 |
UUCAAGUA | m8a | (m7a->m8a) | 0.142000 | 0.164000 | No effect | |
hsa-miR-26a-5p |
cttctcccaTACTTGAAgt |
2 |
UUCAAGUA | m8a | (m7a->m8a) | 0.138000 | 0.146000 |
-0.200000 |
|
hsa-miR-26b-5p |
cttctcccaTACTTGAAgt |
2 |
UUCAAGUA | m8a | (m7a->m8a) | 0.138000 | 0.146000 |
-0.790000 |
|
hsa-miR-3122 |
cttcTCCCAAacttgaagt |
0 | GUUGGGAC | m6b | Disrupted | 0.001000 | -0.001000 |
0.030000 |
|
hsa-miR-4465 |
cttctcccaTACTTGAagt |
2 |
CUCAAGUA | m7b | (m6b->m7b) | 0.142000 | 0.164000 | No effect | |
hsa-miR-5697 |
cttctcccaTACTTGAagt |
0 | UCAAGUAG | m7a | (m6a->m7a) | no TS | 0.061000 |
-0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16414865A>C | COSN9703980 | AOCS-166-1-2 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-153 |
ggagaaaCTATGCActagg |
4 |
UUGCAUAG | m7b | Disrupted | 0.021000 | no TS |
0.010000 |
|
hsa-miR-2467-3p |
ggagaaaCTCTGCactagg |
0 | AGCAGAGG | m6b | Created | no TS | 0.024000 | No effect | |
hsa-miR-3678-3p |
ggagaaaCTCTGCActagg |
0 | CUGCAGAG | m7b | Created | no TS | 0.000000 | No effect | |
hsa-miR-759 |
ggagaaACTCTGCactagg |
0 | GCAGAGUG | m7a | Created | NA | NA | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16415259A>G | COSN5242793 | SS6003119 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-136-3p |
aggataGATGATGaggaat |
0 | CAUCAUCG | m7a | Created | 0.011000 | 0.011000 |
-0.620000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16415427G>A | COSN8581580 | tumor_4135099 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4794 |
tttTAGCCAGAgtttatca |
0 | UCUGGCUA | m8a | Disrupted | -0.154000 | -0.096000 | No effect | |
hsa-miR-514a-5p |
ttttagCCAGAGTttatca |
2 |
UACUCUGG | m7b | Disrupted | -0.355000 | -0.288000 |
0.180000 |
|
hsa-miR-618 |
ttttagccAGAGTTTatca |
3 |
AAACUCUA | m7a | Disrupted | 0.083000 | 0.083000 | No effect | |
hsa-miR-664-5p |
tttTAGCCAGagtttatca |
0 | ACUGGCUA | m7b | (m7b->m6c) | -0.172000 | -0.093000 |
1.690000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16415548T>A | COSN2313923 | RK035_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-202-5p |
gctttttCATAGGAgtttt |
4 |
UUCCUAUG | m7b | Disrupted | -0.034000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16416182T>G | COSN8581581 | tumor_4166706 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16416344T>G | COSN15554929 | AOCS-137-1-X | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-129-5p |
tggttagatGCAAAAAGgg |
0 | CUUUUUGC | m8a | (m7a->m8a) | -0.042000 | 0.097000 | No effect | |
hsa-miR-3680-3p |
tggttagATGCAAAAaggg |
12 |
UUUUGCAU | m8a | Created | -0.043000 | 0.123000 |
-1.190000 |
|
hsa-miR-450b-5p |
tggttagaTGCAAAAaggg |
12 |
UUUUGCAA | m7a | Created | 0.170000 | 0.271000 |
-0.010000 |
|
hsa-miR-507 |
tggttagaTGCAAAAaggg |
12 |
UUUUGCAC | m7a | Created | -0.070000 | 0.019000 |
-3.950000 |
|
hsa-miR-557 |
tggttagaTGCAAAaaggg |
12 |
GUUUGCAC | m6b | Created | -0.063000 | 0.032000 |
-0.040000 |
|
hsa-miR-129-5p |
tggttagatGCAAAAAGgg |
0 | CUUUUUGC | m8a | (m7a->m8a) | -0.042000 | 0.097000 | No effect | |
hsa-miR-3680-3p |
tggttagATGCAAAAaggg |
12 |
UUUUGCAU | m8a | Created | -0.043000 | 0.123000 |
-1.190000 |
|
hsa-miR-450b-5p |
tggttagaTGCAAAAaggg |
12 |
UUUUGCAA | m7a | Created | 0.170000 | 0.271000 |
-0.010000 |
|
hsa-miR-507 |
tggttagaTGCAAAAaggg |
12 |
UUUUGCAC | m7a | Created | -0.070000 | 0.019000 |
-3.950000 |
|
hsa-miR-557 |
tggttagaTGCAAAaaggg |
12 |
GUUUGCAC | m6b | Created | -0.063000 | 0.032000 |
-0.040000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16416756G>A | COSN2313924 | RK022_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-21-5p |
taaagATAAGCTAgctatg |
0 | UAGCUUAU | m8a | Disrupted | 0.069000 | no TS |
0.010000 |
|
hsa-miR-5579-3p |
taaagaTAAGCTAgctatg |
3 |
UUAGCUUA | m7b | Disrupted | 0.072000 | 0.052000 | No effect | |
hsa-miR-590-5p |
taaagATAAGCTagctatg |
0 | GAGCUUAU | m7b | Disrupted | 0.058000 | no TS | No effect | |
hsa-miR-21-5p |
taaagATAAGCTAgctatg |
0 | UAGCUUAU | m8a | Disrupted | 0.069 | no TS |
0.01 |
|
hsa-miR-5579-3p |
taaagaTAAGCTAgctatg |
0 | UUAGCUUA | m7b | Disrupted | 0.072 | 0.052 | No effect | |
hsa-miR-590-5p |
taaagATAAGCTagctatg |
0 | GAGCUUAU | m7b | Disrupted | 0.058 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16416983G>T | COSN8520357 | J52_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16416997A>G | COSN14700071 | CHC433T | [liver][NS][carcinoma][hepatocellular_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16417332->A | ICGC_sm284943 | RK056_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4464 |
attctcCAAACCTTttttg |
0 | AAGGUUUG | m8a | Disrupted | 0.003000 | no TS |
-0.010000 |
|
hsa-miR-4748 |
attctcCAAACCTtttttg |
0 | GAGGUUUG | m7b | Disrupted | 0.013000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16417528G>C | COSN8332194 | SS6003320 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-2115-5p |
gcagtactTGGAAGCTttg |
12 |
AGCUUCCA | m8a | Disrupted | -0.073000 | no TS |
0.230000 |
|
hsa-miR-3691-3p |
gcagtACTTGGaagctttg |
10 |
ACCAAGUC | m6b | Disrupted | -0.036000 | -0.072000 | No effect | |
hsa-miR-5585-5p |
gcaGTACTTCgaagctttg |
1 |
UGAAGUAC | m7b | (m6c->m7b) | -0.298000 | -0.284000 |
-0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16417796G>C | COSN8332195 | SS6003320 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1228-3p |
atgtGGTGTGAaacagcca |
15 |
UCACACCU | m7a | Disrupted | -0.039000 | no TS |
0.030000 |
|
hsa-miR-377-3p |
atgtgGTGTGAaacagcca |
16 |
AUCACACA | m6b | Disrupted | 0.119000 | 0.138000 | No effect | |
hsa-miR-5096 |
atgtggtGTGAAACagcca |
4 |
GUUUCACC | m7a | Disrupted | -0.118000 | -0.118000 | No effect | |
hsa-miR-514a-3p |
atgtgGTGTCAAacagcca |
2 |
AUUGACAC | m7b | Created | 0.114000 | 0.127000 | No effect | |
hsa-miR-514b-3p |
atgtgGTGTCAAacagcca |
2 |
AUUGACAC | m7b | Created | 0.118000 | 0.121000 |
-0.990000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16418093A>C | COSN9703982 | AOCS-166-1-2 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16418352A>G | COSN2313927 | RK115_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16418656C>G | COSN7560572 | 8066852 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.16418692T>C | COSN15332169 | SNU_WGS_04_S1 | [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-147a |
acatgcacaCACACACaca |
0 | GUGUGUGG | m7a | (m6a->m7a) | NA | NA |
0.340000 |
|
hsa-miR-223-5p |
acatgcacATACACacaca |
7 |
CGUGUAUU | m6b | Disrupted | -0.016000 | 0.024000 |
0.280000 |
|
hsa-miR-297 |
acatgcACATACAcacaca |
7 |
AUGUAUGU | m7b | Disrupted | 0.090000 | 0.204000 |
2.310000 |
|
hsa-miR-567 |
acatgcACATACacacaca |
7 |
AGUAUGUU | m6b | Disrupted | 0.291000 | 0.327000 |
0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.16418865T>C | COSN1376179 | BN50T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-5689 |
gcatttaTGTATGCTctgt |
0 | AGCAUACA | m8a | Disrupted | -0.206000 | no TS |
-0.010000 |
hsa-miR-5689 |
gcatttaTGTATGCTctgt |
0 | AGCAUACA | m8a | Disrupted | -0.206000 | no TS |
-0.010000 |
hsa-miR-5689 |
gcatttaTGTATGCTctgt |
0 | AGCAUACA | m8a | Disrupted | -0.206000 | no TS |
-0.010000 |
hsa-miR-5689 |
gcatttaTGTATGCTctgt |
0 | AGCAUACA | m8a | Disrupted | -0.206 | no TS |
-0.01 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
16409616 | rs142148839 | C | C |
hsa-miR-491-3p hsa-miR-586 |
19 19 |
aaaaTGCATAAgg aaAATGCATAagg |
Disrupted Disrupted |
N N |
-0.148 -0.275 |
T |
hsa-let-7a-3p hsa-let-7b-3p hsa-let-7f-1-3p hsa-let-7f-2-3p hsa-miR-1185-1-3p hsa-miR-1185-2-3p hsa-miR-4789-5p hsa-miR-98-3p |
19 19 19 19 19 19 19 19 |
aaaaTGTATAAgg aaaaTGTATAAgg aaaaTGTATAAgg aaaaTGTATAAgg aaaaTGTATAAgg aaaaTGTATAAgg aaaaTGTATAAgg aaaaTGTATAAgg |
Created Created Created Created Created Created Created Created |
N N N N N N N N |
-0.029 -0.036 -0.036 -0.037 -0.037 -0.037 -0.05 -0.026 |
|||
16410958 | rs9407774 | C | C |
hsa-miR-103a-2-5p |
9 |
gAGAAGCAtgatt |
Disrupted |
N |
0.047 |
G |
hsa-miR-1237-3p hsa-miR-1248 hsa-miR-4793-5p hsa-miR-5196-3p hsa-miR-6868-3p |
9 9 13 13 9 |
gAGAAGGAtgatt gAGAAGGAtgatt gagaAGGATGAtt gagaAGGATGAtt gAGAAGGAtgatt |
Created Created Created Created Created |
N N N N N |
0.071 0.069 0.045 0.044 0.104 |
|||
16411465 | rs7853747 | A | C |
hsa-miR-4292 hsa-miR-4308 hsa-miR-4774-5p hsa-miR-5681b hsa-miR-6791-5p |
0 |
aaaataCCAGGGA aaaataCCAGGGA aaaATACCAGgga aaAATACCAggga aaaataCCAGGGA |
Created Created Created Created Created |
N N N N N |
-0.047 -0.06 -0.036 0.066 -0.047 |
A |
hsa-miR-339-5p |
0 |
aaaataACAGGGA |
Disrupted |
N |
-0.044 |
|||
16412670 | rs73415403 | T | T |
hsa-miR-223-5p hsa-miR-297 hsa-miR-455-5p hsa-miR-567 |
7 7 5 7 |
agcacATACACAc agcACATACAcac aGCACATAcacac agcACATACAcac |
Disrupted Disrupted Disrupted Disrupted |
N N N N |
0.09 0.079 0.026 0.086 |
A |
hsa-miR-2113 hsa-miR-218-5p hsa-miR-8068 |
5 6 7 |
aGCACAAAcacac AGCACAAacacac agcACAAACAcac |
Created Created Created |
N N N |
0.043 0.019 0.115 |
|||
16413052 | rs192720739 | T | T |
hsa-miR-567 |
0 |
atAACATACttgt |
Disrupted |
N |
-0.001 |
C |
hsa-miR-3152-3p hsa-miR-595 hsa-miR-6513-3p |
0 |
aTAACACActtgt ataaCACACTTgt ataacACACTTGt |
Created Created Created |
N N N |
0.044 0.014 0.045 |
|||
16413093 | rs113643183 | G | G |
hsa-miR-103a-2-5p |
6 |
cagcAAGAAGCtt |
Disrupted |
N |
0.072 |
A |
hsa-miR-129-5p hsa-miR-208a-5p hsa-miR-208b-5p hsa-miR-6885-3p |
5 14 14 6 |
caGCAAAAAgctt cagcaAAAAGCTt cagcaAAAAGCTt cAGCAAAAagctt |
Created Created Created Created |
N N N N |
0.176 0.117 0.089 0.111 |
|||
16413532 | rs191926963 | C | C |
hsa-let-7i-3p hsa-miR-450a-5p |
2 2 |
atcTTGCGCAAaa atcttgCGCAAAA |
Disrupted Disrupted |
N N |
-0.203 -0.061 |
T |
hsa-miR-3680-3p hsa-miR-450b-5p hsa-miR-507 hsa-miR-557 |
2 2 2 2 |
atcttgTGCAAAA atcttgTGCAAAA atcttGTGCAAAA atcttGTGCAAAA |
Created Created Created Created |
N N N N |
0.061 0.073 0.009 -0.002 |
|||
16413634 | rs1057383 | A | T |
hsa-miR-6128 |
0 |
gtgtaATTCCAGc |
Created |
N |
0.012 |
A |
hsa-miR-1287-5p hsa-miR-1290 hsa-miR-3167 hsa-miR-378j hsa-miR-6839-5p hsa-miR-876-5p |
0 |
gtgtaaATCCAGC gtgtAAATCCAgc gtgtAAATCCAgc gtgtaAATCCAGc gtgtaAATCCAGc gtgtAAATCCAgc |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N |
-0.048 0.106 0.077 -0.002 -0.002 0.098 |
|||
16413781 | rs7035049 | T | C |
hsa-miR-3611 hsa-miR-8066 |
0 |
tCTTCACAttttc tctTCACATTttc |
Created Created |
N N |
-0.022 0.065 |
T |
hsa-miR-4517 |
0 |
tctTCATATTttc |
Disrupted |
N |
0.11 |
|||
16417098 | rs140374330 | - | G |
hsa-miR-514a-3p hsa-miR-514b-3p |
8 8 |
tatttTGTCAAAc tatttTGTCAAAc |
Unknown Unknown |
N N |
0.041 0.041 |
A |
hsa-miR-3161 hsa-miR-3163 |
9 12 |
tattTTATCAAac tATTTTATcaaac |
Unknown Unknown |
N N |
0.073 0.188 |
|||
16417223 | rs34846892 | - | - |
hsa-miR-6869-5p |
12 |
attTACTCAAgtt |
Unknown |
N |
0.046 |
T |
hsa-miR-3616-5p hsa-miR-4635 hsa-miR-548ao-5p hsa-miR-548ax hsa-miR-5585-5p hsa-miR-573 |
11 10 12 12 12 11 |
atttACTTCAAgtt atttaCTTCAAGtt atTTACTTCAagtt atTTACTTCAagtt attTACTTCAagtt atttACTTCAAgtt |
Unknown Unknown Unknown Unknown Unknown Unknown |
N N N N N N |
0.044 -0.001 0.056 0.056 0.041 0.057 |
|||
16418686 | rs138293078 | C | C |
hsa-miR-6867-5p |
0 |
taCACACACAcac |
Disrupted |
N |
-0.596 |
T |
hsa-miR-223-5p hsa-miR-297 hsa-miR-511-3p hsa-miR-567 |
0 |
tacacATACACAc tacACATACAcac TACACATAcacac tacACATACAcac |
Created Created Created Created |
N N N N |
-0.068 -0.179 -0.167 -0.07 |
|||
16418862 | rs189214797 | G | G |
hsa-miR-5689 hsa-miR-6501-3p |
3 3 |
aTGTATGCtctgt atgtaTGCTCTGt |
Disrupted Disrupted |
N N |
-0.206 -0.208 |
A |
hsa-miR-4797-5p |
18 |
atgtatACTCTGT |
Created |
N |
-0.177 |
|||
16418869 | rs182036145 | T | |||||||
A |
hsa-miR-155-5p hsa-miR-323a-3p hsa-miR-5700 |
1 1 1 |
tGCATTAAtgtat tgcatTAATGTAt TGCATTAatgtat |
Created Created Created |
N N N |
-0.058 -0.011 -0.063 |