| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_014753 |
|---|---|
| Gene Symbol: | BMS1 |
| Description: | Homo sapiens BMS1 homolog, ribosome assembly protein (yeast) (BMS1), mRNA. |
| Gene Location: | chr10(+):43277953-43330385 |
| Browse Associations | |
| Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
|---|---|---|---|---|---|---|---|---|---|
| chr10:g.42831203A>C | COSN6970583 | 8033510 | [pancreas][NS][carcinoma][NS] | ||||||
| miRNA Targets Table | |||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
| hsa-miR-4524a-3p |
gctcaagagCTGTCTCtac |
2 |
UGAGACAG | m7b | (m6c->m7b) | -0.041000 | -0.199000 |
-0.460000 |
|
| Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
|---|---|---|---|---|---|---|---|---|---|
| chr10:g.42831457A>G | COSN6071434 | RK191_C01 | [liver][NS][carcinoma][NS] | ||||||
| miRNA Targets Table | |||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
| hsa-miR-944 |
tttgtggATAATTatttat |
2 |
AAAUUAUU | m6b | Disrupted | 0.057000 | no TS |
0.030000 |
|
| Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
|---|---|---|---|---|---|---|---|---|---|
| chr10:g.42831782G>A | COSN1489244 | RK033_C01 | [liver][NS][carcinoma][NS] | ||||||
| miRNA Targets Table | |||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
| hsa-miR-5580-3p |
aaggaaatCATATGTatca |
2 |
CACAUAUG | m7b | Created | -0.006000 | -0.076000 | No effect | |
| Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
|---|---|---|---|---|---|---|---|---|---|
| chr10:g.42832025T>C | COSN8185379 | PCSI_0083_Pa_P_526 | [pancreas][NS][carcinoma][NS] | ||||||
| miRNA Targets Table | |||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
| hsa-miR-297 |
tcacACATACAacaatcag |
0 | AUGUAUGU | m7b | Created | no TS | -0.037000 |
-0.390000 |
|
| hsa-miR-3149 |
tcacaCATACAAcaatcag |
0 | UUUGUAUG | m7b | Created | no TS | -0.021000 |
-0.030000 |
|
| hsa-miR-3613-5p |
tcacacaTACAACAatcag |
2 |
UGUUGUAC | m7a | Created | 0.096000 | 0.087000 |
-0.110000 |
|
| hsa-miR-567 |
tcacACATACaacaatcag |
0 | AGUAUGUU | m6b | Created | no TS | -0.011000 |
-0.030000 |
|
| hsa-miR-675-3p |
tcacaCATACAacaatcag |
0 | CUGUAUGC | m6b | Created | no TS | -0.003000 |
-0.060000 |
|
| Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
|---|---|---|---|---|---|---|---|---|---|
| chr10:g.42832325T>C | COSN6970584 | 8036161 | [pancreas][NS][carcinoma][NS] | ||||||
| miRNA Targets Table | |||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
| hsa-miR-4777-3p |
ttgggaggcTGAGGTAgga |
2 |
AUACCUCA | m7b | (m7b->m6c) | 0.065000 | no TS |
1.520000 |
|
| Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
|---|---|---|---|---|---|---|---|---|---|
| chr10:g.42833078G>C | COSN8933038 | SS6003149 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
| miRNA Targets Table | |||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
| hsa-miR-149-5p |
ttttAGCCAGAagagtgga |
1 |
UCUGGCUC | m7a | Disrupted | -0.038000 | no TS | No effect | |
| hsa-miR-3064-5p |
ttttAGCCAGAagagtgga |
1 |
UCUGGCUG | m7a | Disrupted | -0.023000 | no TS |
0.010000 |
|
| hsa-miR-3182 |
ttttagcCAGAAGagtgga |
1 |
GCUUCUGU | m6b | Disrupted | -0.008000 | -0.063000 |
0.720000 |
|
| hsa-miR-4474-3p |
ttttAGCCACAAgagtgga |
0 | UUGUGGCU | m8a | Created | no TS | -0.127000 |
-0.890000 |
|
| hsa-miR-4794 |
tttTAGCCAGAagagtgga |
1 |
UCUGGCUA | m8a | Disrupted | -0.096000 | no TS |
4.620000 |
|
| hsa-miR-664-5p |
tttTAGCCAGaagagtgga |
1 |
ACUGGCUA | m7b | (m7b->m6b) | -0.127000 | no TS |
0.130000 |
|
| Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
|---|---|---|---|---|---|---|---|---|---|
| chr10:g.42833241C>T | COSN10067806 | C0094T | [kidney][NS][other][neoplasm] | ||||||
| miRNA Targets Table | |||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
| hsa-let-7a-3p |
aaaagtTTGTATAttaaga |
2 |
CUAUACAA | m7b | Created | 0.036000 | 0.072000 |
-0.600000 |
|
| hsa-let-7b-3p |
aaaagtTTGTATAttaaga |
2 |
CUAUACAA | m7b | Created | 0.055000 | 0.081000 |
-1.020000 |
|
| hsa-let-7f-1-3p |
aaaagtTTGTATAttaaga |
2 |
CUAUACAA | m7b | Created | 0.036000 | 0.062000 |
-0.100000 |
|
| hsa-miR-1277-5p |
aaaagtttgTATATTaaga |
2 |
AAAUAUAU | m6b | Created | 0.344000 | 0.488000 |
-0.010000 |
|
| hsa-miR-4517 |
aaaagtttgCATATTaaga |
4 |
AAAUAUGA | m6b | Disrupted | 0.050000 | -0.028000 |
0.010000 |
|
| hsa-miR-4666a-3p |
aaaagtTTGTATattaaga |
1 |
CAUACAAU | m6b | Created | 0.119000 | 0.214000 |
-0.010000 |
|
| hsa-miR-5583-3p |
aaaagtttgCATATTaaga |
1 |
GAAUAUGG | m6b | Disrupted | 0.074000 | no TS |
0.020000 |
|
| Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
|---|---|---|---|---|---|---|---|---|---|
| chr10:g.42833246T>C | COSN10067807 | C0094T | [kidney][NS][other][neoplasm] | ||||||
| miRNA Targets Table | |||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
| hsa-miR-190a |
tttgCATATCAagattatt |
2 |
UGAUAUGU | m7a | Created | -0.155000 | -0.147000 |
-0.030000 |
|
| hsa-miR-190b |
tttgCATATCAagattatt |
2 |
UGAUAUGU | m7a | Created | -0.155000 | -0.147000 | No effect | |
| hsa-miR-4517 |
tttgCATATTaagattatt |
4 |
AAAUAUGA | m6b | Disrupted | 0.050000 | -0.026000 |
0.010000 |
|
| hsa-miR-5583-3p |
tttgCATATTaagattatt |
1 |
GAAUAUGG | m6b | Disrupted | 0.074000 | no TS |
0.010000 |
|
| Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
|---|---|---|---|---|---|---|---|---|---|
| chr10:g.42833328G>T | COSN8530570 | tumor_4133511 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | ||||||
| miRNA Targets Table | |||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
| hsa-miR-412 |
atttttattGGTGAAGgtt |
1 |
ACUUCACC | m7b | (m7b->m6c) | -0.043000 | no TS | No effect | |
| hsa-miR-4719 |
atttttATTTGTGAaggtt |
2 |
UCACAAAU | m8a | Created | 0.070000 | 0.171000 |
-1.020000 |
|
| Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
|---|---|---|---|---|---|---|---|---|---|
| chr10:g.42833490T>A | COSN1489245 | RK037_C01 | [liver][NS][carcinoma][NS] | ||||||
| miRNA Targets Table | |||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
| hsa-miR-1225-3p |
cctGGGCTCAatggtatgg |
0 | UGAGCCCC | m7a | (m6a->m7a) | no TS | -0.043000 |
-0.050000 |
|
| hsa-miR-1233 |
cctGGGCTCAatggtatgg |
0 | UGAGCCCU | m7a | (m6a->m7a) | no TS | -0.035000 | No effect | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr10:g.42833645G>A | COSN6970585 | 8036161 | [pancreas][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3619-3p |
gccatatacATGGTCCatc |
0 | GGGACCAU | m7b | (m6c->m7b) | -0.065000 | -0.116000 |
-2.000000 |
| hsa-miR-591 |
gccatataCATGGTCcatc |
0 | AGACCAUG | m7b | Created | no TS | -0.080000 |
-0.430000 |
| Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
|---|---|---|---|---|---|---|---|---|---|
| 42831808 | rs111535934 | G | G |
hsa-miR-369-3p hsa-miR-4681 hsa-miR-6082 |
3 2 2 |
cttcccGTATTAT cTTCCCGTAttat cttccCGTATTAt |
Disrupted Disrupted Disrupted |
N N N |
0.101 -0.318 -0.053 |
| A |
hsa-miR-4517 hsa-miR-4747-5p hsa-miR-5196-5p hsa-miR-5583-3p hsa-miR-5692b hsa-miR-5692c hsa-miR-6871-5p |
2 2 2 2 3 3 2 |
cttccCATATTAt CTTCCCAtattat CTTCCCAtattat cttcCCATATTAt cttcccATATTAT cttcccATATTAT ctTCCCATAttat |
Created Created Created Created Created Created Created |
N N N N N N N |
0.059 -0.066 -0.062 -0.042 0.154 0.154 -0.068 |
|||
| 42831983 | rs187249437 | A | A |
hsa-let-7a-3p hsa-let-7b-3p hsa-let-7f-1-3p hsa-miR-300 hsa-miR-381-3p hsa-miR-4666a-3p hsa-miR-98-3p |
2 2 2 2 2 2 2 |
agTTGTATAtttt agTTGTATAtttt agTTGTATAtttt agTTGTATAtttt agTTGTATAtttt agTTGTATAtttt agTTGTATAtttt |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N |
-0.008 0.011 0.001 0.03 0.03 0.023 0.011 |
| G |
hsa-miR-4731-3p hsa-miR-4801 |
2 2 |
agTTGTGTAtttt agTTGTGTAtttt |
Created Created |
N N |
-0.012 -0.019 |
|||
| 42832472 | rs201656232 | - | TG |
hsa-miR-4719 |
2 |
atgaATTTGTGtgtc |
Unknown |
N |
0.002 |
| - | |||||||||
| 42833058 | rs116806586 | A | A |
hsa-let-7a-3p hsa-let-7b-3p hsa-let-7f-1-3p hsa-miR-1284 hsa-miR-300 hsa-miR-381-3p hsa-miR-4666a-3p hsa-miR-7849-3p hsa-miR-98-3p |
2 2 2 2 2 2 2 2 2 |
aaTTGTATAgttt aaTTGTATAgttt aaTTGTATAgttt aatTGTATAGttt aaTTGTATAgttt aaTTGTATAgttt aATTGTATAgttt AATTGTAtagttt aaTTGTATAgttt |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N N N |
0.044 0.044 0.035 -0.058 0.082 0.089 0.112 0.072 -0.003 |
| G |
hsa-miR-4731-3p hsa-miR-4801 |
2 2 |
aaTTGTGTAgttt aaTTGTGTAgttt |
Created Created |
N N |
0.05 0.043 |
|||
| 42833241 | rs139700940 | C | C |
hsa-miR-4517 hsa-miR-5583-3p |
1 1 |
agtttgCATATTA agtttgCATATTA |
Disrupted Disrupted |
N N |
0.078 0.074 |
| T |
hsa-let-7a-3p hsa-let-7b-3p hsa-let-7f-1-3p hsa-miR-1277-5p hsa-miR-300 hsa-miR-381-3p hsa-miR-4666a-3p hsa-miR-98-3p |
2 2 2 1 2 2 2 2 |
agtTTGTATAtta agtTTGTATAtta agtTTGTATAtta agtttgTATATTA agtTTGTATAtta agtTTGTATAtta agtTTGTATAtta agtTTGTATAtta |
Created Created Created Created Created Created Created Created |
N N N N N N N N |
0.036 0.026 0.026 0.144 0.092 0.092 0.095 0.017 |
|||
| 42833246 | rs112772563 | T | T |
hsa-miR-4517 hsa-miR-5583-3p hsa-miR-889-3p |
1 1 1 |
gCATATTAagatt gCATATTAagatt gcATATTAAgatt |
Disrupted Disrupted Disrupted |
N N N |
0.076 0.074 0.141 |
| C |
hsa-miR-190a-5p hsa-miR-190b |
1 1 |
gCATATCAagatt gCATATCAagatt |
Created Created |
N N |
0.008 0.008 |
|||
| 42833328 | rs200513807 | G | G |
hsa-miR-197-3p hsa-miR-412-3p hsa-miR-6754-3p hsa-miR-95-5p |
2 1 1 2 |
tttatTGGTGAAg tttattGGTGAAG tttattGGTGAAG TTTATTGgtgaag |
Disrupted Disrupted Disrupted Disrupted |
N N N N |
0.013 -0.043 -0.043 0.115 |
| T |
hsa-miR-4719 hsa-miR-513b-5p |
2 2 |
tttATTTGTGAag tttatTTGTGAAg |
Created Created |
N N |
0.101 0.071 |
|||
| 42833740 | rs113190084 | T | |||||||
| C |
hsa-miR-297 hsa-miR-3171 hsa-miR-567 |
2 3 2 |
gACATACAtcaaa gacATACATCAaa gACATACAtcaaa |
Created Created Created |
N N N |
0.005 -0.018 0.011 |
|||
| 42834514 | rs111545137 | - | C |
hsa-miR-125b-2-3p hsa-miR-4731-3p hsa-miR-4801 |
0 |
attttACTTGTGt attttaCTTGTGT attttaCTTGTGT |
Unknown Unknown Unknown |
N N N |
-0.154 -0.148 -0.167 |
| T |
hsa-miR-3163 hsa-miR-4719 |
0 |
ATTTTATttgtgt attttATTTGTGt |
Unknown Unknown |
N N |
0.051 -0.132 |