| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_001256792 |
|---|---|
| Gene Symbol: | BMPR1B |
| Description: | Homo sapiens bone morphogenetic protein receptor, type IB (BMPR1B), mRNA. |
| Browse Associations | |
| Browse Pathways | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr4:g.95154776A>C | COSN5581044 | RK155_C01 | [liver][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3922-5p |
caaGCCTTGAacatcgtcc |
0 | UCAAGGCC | m7a | (m7a->m6a) | -0.154000 | -0.002000 |
0.460000 |
| hsa-miR-4708-3p |
caaGCCTTGCacatcgtcc |
0 | AGCAAGGC | m7b | (m6b->m7b) | no TS | -0.457000 |
-7.330000 |
| hsa-miR-561-5p |
caagCCTTGAacatcgtcc |
0 | AUCAAGGA | m6b | Disrupted | -0.165000 | -0.054000 |
4.580000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr4:g.95154818G>T | 0_186 | Lung cancer | ||||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-125a-5p |
cacctCTCAGGGAgcgacc |
19 |
UCCCUGAG | m8a | Disrupted | -0.326 | no TS | No effect |
| hsa-miR-125b-5p |
cacctCTCAGGGAgcgacc |
19 |
UCCCUGAG | m8a | Disrupted | -0.326 | no TS | No effect |
| hsa-miR-345-3p |
cacctcTCAGGGagcgacc |
20 |
GCCCUGAA | m6b | Disrupted | -0.13 | no TS |
6.5 |
| hsa-miR-4319 |
cacctCTCAGGGAgcgacc |
19 |
UCCCUGAG | m8a | Disrupted | -0.326 | no TS |
0.03 |
| hsa-miR-4324 |
caccTCTCAGGGagcgacc |
18 |
CCCUGAGA | m8a | Disrupted | -0.076 | no TS | No effect |
| hsa-miR-4712-3p |
cacCTCTCATggagcgacc |
19 |
AAUGAGAG | m7b | (m6b->m7b) | -0.099 | -0.162 | No effect |
| hsa-miR-4732-3p |
cacctcTCAGGGagcgacc |
20 |
GCCCUGAC | m6b | Disrupted | -0.117 | no TS |
-2.37 |
| hsa-miR-670 |
cacctcTCAGGGAgcgacc |
20 |
GUCCCUGA | m7b | Disrupted | -0.253 | -0.155 |
0.07 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr4:g.95155206T>G | COSN7849199 | 8035603 | [pancreas][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-4717-5p |
caccccgtcGTGGCCTcct |
0 | UAGGCCAC | m7b | (m6c->m7b) | -0.152000 | -0.245000 |
-0.570000 |
| hsa-miR-483-5p |
cacCCCGTCTTggcctcct |
0 | AAGACGGG | m8a | Disrupted | -0.145000 | no TS |
5.400000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr4:g.95155750A>G | COSN5581045 | RK145_C01 | [liver][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-624-3p |
gcatACCTTGTtttgtaca |
0 | CACAAGGU | m7b | Created | -0.034000 | -0.130000 |
-0.170000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr4:g.95156054T>C | COSN2051995 | RK208_C01 | [liver][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3121-3p |
ttcaCTATTTAatttatta |
0 | UAAAUAGA | m7a | Disrupted | 0.103000 | no TS |
-0.030000 |
| hsa-miR-5585-3p |
ttcaCTATTCAatttatta |
0 | CUGAAUAG | m7b | Created | no TS | -0.001000 |
-0.030000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr4:g.95156132T>C | COSN2051996 | RK020_C01 | [liver][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-4670-3p |
tttTAACTTCggagcaaca |
0 | UGAAGUUA | m7b | (m6b->m7b) | 0.105000 | 0.177000 | No effect |
| hsa-miR-4671-5p |
ttttaaCTTCGGagcaaca |
0 | ACCGAAGA | m6b | Created | no TS | -0.072000 |
-5.100000 |
| hsa-miR-548at-5p |
tttTAACTTTggagcaaca |
0 | AAAAGUUA | m7b | (m7b->m6b) | 0.268000 | 0.131000 |
0.010000 |
| hsa-miR-4670-3p |
tttTAACTTCggagcaaca |
0 | UGAAGUUA | m7b | (m6b->m7b) | 0.105 | 0.177 | No effect |
| hsa-miR-4671-5p |
ttttaaCTTCGGagcaaca |
0 | ACCGAAGA | m6b | Created | no TS | -0.072 |
-5.1 |
| hsa-miR-548at-5p |
tttTAACTTTggagcaaca |
0 | AAAAGUUA | m7b | (m7b->m6b) | 0.268 | 0.131 |
0.01 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr4:g.95157022A>G | 6_2240 | CLL3 | Chronic lymphocytic leukaemia | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-1297 |
aaTACTTGAAcgtggataa |
6 |
UUCAAGUA | m8a | (m8a->m7a) | -0.033 | -0.044 |
0.12 |
| hsa-miR-26a-5p |
aaTACTTGAAcgtggataa |
6 |
UUCAAGUA | m8a | (m8a->m7a) | -0.05 | -0.06 |
0.31 |
| hsa-miR-26b-5p |
aaTACTTGAAcgtggataa |
6 |
UUCAAGUA | m8a | (m8a->m7a) | -0.04 | -0.051 |
0.04 |
| hsa-miR-4465 |
aaTACTTGAGcgtggataa |
6 |
CUCAAGUA | m8a | (m7a->m8a) | -0.089 | -0.095 |
0.13 |
| hsa-miR-574-3p |
aatactTGAGCGTGgataa |
5 |
CACGCUCA | m8a | Created | no TS | -0.154 |
-3.18 |
| hsa-miR-1297 |
aaTACTTGAAcgtggataa |
0 | UUCAAGUA | m8a | (m8a->m7a) | -0.033000 | -0.044000 |
0.120000 |
| hsa-miR-26a-5p |
aaTACTTGAAcgtggataa |
0 | UUCAAGUA | m8a | (m8a->m7a) | -0.050000 | -0.060000 |
0.310000 |
| hsa-miR-26b-5p |
aaTACTTGAAcgtggataa |
0 | UUCAAGUA | m8a | (m8a->m7a) | -0.040000 | -0.051000 |
0.040000 |
| hsa-miR-4465 |
aaTACTTGAGcgtggataa |
0 | CUCAAGUA | m8a | (m7a->m8a) | -0.089000 | -0.095000 |
0.130000 |
| hsa-miR-574-3p |
aatactTGAGCGTGgataa |
0 | CACGCUCA | m8a | Created | no TS | -0.154000 |
-3.180000 |