SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_130851
Gene Symbol: BMP4
Description: Homo sapiens bone morphogenetic protein 4 (BMP4), transcript variant 1, mRNA.
Gene Location: chr14(-):54416454-54421270
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Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr14:g.53949847A>G COSN6637747 CHC433T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-224-5p accttatttGTGACTTtac
 0 CAAGUCAC m7b (m6b->m7b) no TS -0.242000 -2.180000
hsa-miR-4719 accttATTTGTGActttac
 0 UCACAAAU m8a Created no TS -0.198000 -1.020000

Mutation Mutation ID Sample Name Cancer Type
chr14:g.53949884A>T COSN15565142 C0010T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-587 aaaaaaaaATGGAAAaaat
 0 UUUCCAUA m7a Created no TS -0.101000 -7.080000

Mutation Mutation ID Sample Name Cancer Type
chr14:g.53949885A>T COSN7021582 8016470 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-202-5p aaaaaaaaATAGGAAaaaa
 0 UUCCUAUG m7a Created no TS -0.151000 -2.600000
hsa-miR-337-3p aaaaaaaaATAGGAaaaaa
 0 CUCCUAUA m6b Created no TS -0.155000 -2.500000
hsa-miR-3685 aaaaaaaaaTAGGAAAaaa
 0 UUUCCUAC m7a (m6a->m7a) no TS -0.119000 -2.610000
hsa-miR-384 aaaaaaaaaTAGGAAaaaa
 0 AUUCCUAG m6b Created no TS -0.131000 -4.280000
hsa-miR-202-5p aaaaaaaaATAGGAAaaaa
 0 UUCCUAUG m7a Created no TS -0.151000 -2.600000
hsa-miR-337-3p aaaaaaaaATAGGAaaaaa
 0 CUCCUAUA m6b Created no TS -0.155000 -2.500000
hsa-miR-3685 aaaaaaaaaTAGGAAAaaa
 0 UUUCCUAC m7a (m6a->m7a) no TS -0.119000 -2.610000
hsa-miR-384 aaaaaaaaaTAGGAAaaaa
 0 AUUCCUAG m6b Created no TS -0.131000 -4.280000

Mutation Mutation ID Sample Name Cancer Type
chr14:g.53949902T>A COSN6411862 HX18T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-5692a acttTTATTTaaaaaaaaa
 19
 CAAAUAAU m6b Disrupted 0.092000 0.052000 0.150000

Mutation Mutation ID Sample Name Cancer Type
chr14:g.53949910C>A COSN6253810 RK136_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3163 atagctggaATTTTATtta
 0 UAUAAAAU m7b (m6b->m7b) no TS -0.042000 -0.410000
hsa-miR-548n atagctggACTTTTattta
 12
 CAAAAGUA m6b Disrupted -0.017000 no TS 0.020000
hsa-miR-548t-5p atagctggACTTTTattta
 12
 CAAAAGUG m6b Disrupted -0.015000 no TS 0.030000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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