SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_000055
Gene Symbol: BCHE
Description: Homo sapiens butyrylcholinesterase (BCHE), mRNA.
Gene Location: chr3(-):165490691-165555253

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr3:g.165772932T>C COSN4813761 tumor_4170686 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1279 atgtCAATATGAgatatta
4
UCAUAUUG m8a Disrupted -0.313000 no TS 4.830000
hsa-miR-1285-5p atgtcaataTGAGATatta
4
GAUCUCAC m6b Disrupted -0.166000 no TS 4.170000

Mutation Mutation ID Sample Name Cancer Type
chr3:g.165773093T>A COSN9530733 AOCS-133-1-9 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3148 aaatttaagTTTTTCCccc
0 UGGAAAAA m7b (m7b->m6b) -0.019000 no TS 0.380000
hsa-miR-548ae aaatttaAGTTTTTccccc
0 CAAAAACU m7b Disrupted -0.054000 no TS 1.380000
hsa-miR-548ah-3p aaatttaAGTTTTTccccc
0 CAAAAACU m7b Disrupted -0.054000 no TS 1.380000
hsa-miR-548aj-3p aaatttaAGTTTTTccccc
0 UAAAAACU m7b Disrupted -0.054000 no TS 1.280000
hsa-miR-548am-3p aaatttaAGTTTTTccccc
0 CAAAAACU m7b Disrupted -0.054000 no TS 1.380000
hsa-miR-548aq-3p aaatttaAGTTTTTccccc
0 CAAAAACU m7b Disrupted -0.054000 no TS 1.380000
hsa-miR-548x-3p aaatttaAGTTTTTccccc
0 UAAAAACU m7b Disrupted -0.054000 no TS 1.280000
hsa-miR-5582-3p aaatttAAGTTTTtccccc
0 UAAAACUU m7b Disrupted -0.055000 no TS 1.620000

Mutation Mutation ID Sample Name Cancer Type
chr3:g.165773262A>G COSN8363910 tumor_4135099 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1237 gcCAGAAGGAtaatattga
0 UCCUUCUG m8a (m8a->m7b) -0.344000 -0.177000 1.300000
hsa-miR-362-5p gccagAAGGATaatattga
0 AAUCCUUG m6b Disrupted -0.120000 no TS 4.390000
hsa-miR-500b gccagAAGGATaatattga
0 AAUCCUUG m6b Disrupted -0.126000 no TS 4.250000
hsa-miR-501-5p gccagAAGGATaatattga
0 AAUCCUUU m6b Disrupted -0.117000 no TS 4.250000
hsa-miR-556-3p gccagaagGGTAATATtga
0 AUAUUACC m8a Created no TS -0.140000 -4.270000
hsa-miR-656 gccagaaggATAATATTga
7
AAUAUUAU m8a (m8a->m7a) 0.002000 no TS 1.180000

Mutation Mutation ID Sample Name Cancer Type
chr3:g.165773326C>T COSN7832624 8036161 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3145-3p caaAAATATCaggagcttt
7
AGAUAUUU m7b (m7b->m6c) -0.169000 no TS 0.060000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table

Location SNP ID Ancestral
Allele
Allele miR ID Conservation miRSite FuncClass Validation context+
score change
165772927 rs187886111 T T hsa-miR-1285-5p
hsa-miR-889-3p
4
6
aTGAGATAttaaa
atgaGATATTAAa
Disrupted
Disrupted
N
N
-0.166
-0.263
C hsa-miR-513b-3p
6
atgaGACATTAaa
Created
N
-0.127
165772934 rs148490591 T T hsa-miR-1279
4
tgtCAATATGAga
Disrupted
N
-0.313
165773088 rs199567692 C C hsa-miR-3148
hsa-miR-328-5p
hsa-miR-4668-5p
hsa-miR-6795-5p
hsa-miR-6885-5p
hsa-miR-6887-5p
hsa-miR-7109-5p
3
1
1
1
1
1
1
gTTTTTCCcccca
gtttttCCCCCCA
gtTTTTCCCccca
gttttTCCCCCCA
gtttttCCCCCCA
gttttTCCCCCCA
gtttttCCCCCCA
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
Disrupted
N
N
N
N
N
N
N
0.049
-0.291
0.026
-0.614
-0.302
-0.603
-0.358
T hsa-miR-1275
hsa-miR-4525
hsa-miR-4665-5p
hsa-miR-4723-5p
hsa-miR-5010-5p
hsa-miR-5698
hsa-miR-625-5p
hsa-miR-6870-5p
hsa-miR-7111-5p
1
1
1
1
1
1
1
1
1
gtttttTCCCCCA
gtttttTCCCCCA
gtttttTCCCCCA
gtttttTCCCCCA
gtttttTCCCCCA
gtttttTCCCCCA
gttttTTCCCCCA
gtttttTCCCCCA
gtttttTCCCCCA
Created
Created
Created
Created
Created
Created
Created
Created
Created
N
N
N
N
N
N
N
N
N
-0.305
-0.255
-0.277
-0.248
-0.265
-0.251
-0.211
-0.248
-0.251
165773088 rs3836432 - - hsa-miR-3148
hsa-miR-328-5p
hsa-miR-4668-5p
hsa-miR-625-5p
hsa-miR-6795-5p
hsa-miR-6885-5p
hsa-miR-6887-5p
hsa-miR-7109-5p
3
1
1
1
1
1
1
1
gTTTTTCCcccca
gtttttCCCCCCA
gtTTTTCCCccca
gtttTTCCCCCca
gttttTCCCCCCA
gtttttCCCCCCA
gttttTCCCCCCA
gtttttCCCCCCA
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
N
N
N
N
N
N
N
N
0.038
0.005
0.009
0.003
-0.009
0.001
0.002
0.002
T
165773089 rs17846900 - - hsa-miR-3148
hsa-miR-4668-5p
hsa-miR-548ae
hsa-miR-548ah-3p
hsa-miR-548aj-3p
hsa-miR-548am-3p
hsa-miR-548aq-3p
hsa-miR-548j-3p
hsa-miR-548x-3p
hsa-miR-625-5p
hsa-miR-6795-5p
hsa-miR-6887-5p
3
1
0
0
0
0
0
0
0
1
1
1
agTTTTTCCcccc
agtTTTTCCCccc
AGTTTTTcccccc
AGTTTTTcccccc
AGTTTTTcccccc
AGTTTTTcccccc
AGTTTTTcccccc
AGTTTTTcccccc
AGTTTTTcccccc
agtttTTCCCCCc
agttttTCCCCCC
agttttTCCCCCC
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
Unknown
N
N
N
N
N
N
N
N
N
N
N
N
0.038
0.009
0.02
0.02
0.02
0.02
0.02
0.02
0.02
0.003
-0.009
0.002
T
165773326 rs191995340 C C hsa-miR-3145-3p
7
AAATATCAggagc
Disrupted
N
-0.169
G hsa-miR-1279
hsa-miR-4268
hsa-miR-6072
hsa-miR-6891-3p
7
12
2
2
aAATATGAggagc
aaatatGAGGAGC
aaatATGAGGAgc
aaatATGAGGAgc
Created
Created
Created
Created
N
N
N
N
-0.029
-0.35
-0.158
-0.158
165773329 rs201751925 - TTAGATCAAGGCAAAAAT hsa-miR-3145-3p
7
tttcctttagatcaaggcaaAAATATCAggagcttttttacacacct
Unknown
N
-0.169
- hsa-miR-3650
7
tttcctatcaggagcttttttACACACCt
Unknown
N
-0.004

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