SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_000055 |
---|---|
Gene Symbol: | BCHE |
Description: | Homo sapiens butyrylcholinesterase (BCHE), mRNA. |
Gene Location: | chr3(-):165490691-165555253 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.165772932T>C | COSN4813761 | tumor_4170686 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1279 |
atgtCAATATGAgatatta |
4 |
UCAUAUUG | m8a | Disrupted | -0.313000 | no TS |
4.830000 |
|
hsa-miR-1285-5p |
atgtcaataTGAGATatta |
4 |
GAUCUCAC | m6b | Disrupted | -0.166000 | no TS |
4.170000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.165773093T>A | COSN9530733 | AOCS-133-1-9 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3148 |
aaatttaagTTTTTCCccc |
0 | UGGAAAAA | m7b | (m7b->m6b) | -0.019000 | no TS |
0.380000 |
|
hsa-miR-548ae |
aaatttaAGTTTTTccccc |
0 | CAAAAACU | m7b | Disrupted | -0.054000 | no TS |
1.380000 |
|
hsa-miR-548ah-3p |
aaatttaAGTTTTTccccc |
0 | CAAAAACU | m7b | Disrupted | -0.054000 | no TS |
1.380000 |
|
hsa-miR-548aj-3p |
aaatttaAGTTTTTccccc |
0 | UAAAAACU | m7b | Disrupted | -0.054000 | no TS |
1.280000 |
|
hsa-miR-548am-3p |
aaatttaAGTTTTTccccc |
0 | CAAAAACU | m7b | Disrupted | -0.054000 | no TS |
1.380000 |
|
hsa-miR-548aq-3p |
aaatttaAGTTTTTccccc |
0 | CAAAAACU | m7b | Disrupted | -0.054000 | no TS |
1.380000 |
|
hsa-miR-548x-3p |
aaatttaAGTTTTTccccc |
0 | UAAAAACU | m7b | Disrupted | -0.054000 | no TS |
1.280000 |
|
hsa-miR-5582-3p |
aaatttAAGTTTTtccccc |
0 | UAAAACUU | m7b | Disrupted | -0.055000 | no TS |
1.620000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.165773262A>G | COSN8363910 | tumor_4135099 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1237 |
gcCAGAAGGAtaatattga |
0 | UCCUUCUG | m8a | (m8a->m7b) | -0.344000 | -0.177000 |
1.300000 |
|
hsa-miR-362-5p |
gccagAAGGATaatattga |
0 | AAUCCUUG | m6b | Disrupted | -0.120000 | no TS |
4.390000 |
|
hsa-miR-500b |
gccagAAGGATaatattga |
0 | AAUCCUUG | m6b | Disrupted | -0.126000 | no TS |
4.250000 |
|
hsa-miR-501-5p |
gccagAAGGATaatattga |
0 | AAUCCUUU | m6b | Disrupted | -0.117000 | no TS |
4.250000 |
|
hsa-miR-556-3p |
gccagaagGGTAATATtga |
0 | AUAUUACC | m8a | Created | no TS | -0.140000 |
-4.270000 |
|
hsa-miR-656 |
gccagaaggATAATATTga |
7 |
AAUAUUAU | m8a | (m8a->m7a) | 0.002000 | no TS |
1.180000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.165773326C>T | COSN7832624 | 8036161 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3145-3p |
caaAAATATCaggagcttt |
7 |
AGAUAUUU | m7b | (m7b->m6c) | -0.169000 | no TS |
0.060000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
165772927 | rs187886111 | T | T |
hsa-miR-1285-5p hsa-miR-889-3p |
4 6 |
aTGAGATAttaaa atgaGATATTAAa |
Disrupted Disrupted |
N N |
-0.166 -0.263 |
C |
hsa-miR-513b-3p |
6 |
atgaGACATTAaa |
Created |
N |
-0.127 |
|||
165772934 | rs148490591 | T | T |
hsa-miR-1279 |
4 |
tgtCAATATGAga |
Disrupted |
N |
-0.313 |
165773088 | rs199567692 | C | C |
hsa-miR-3148 hsa-miR-328-5p hsa-miR-4668-5p hsa-miR-6795-5p hsa-miR-6885-5p hsa-miR-6887-5p hsa-miR-7109-5p |
3 1 1 1 1 1 1 |
gTTTTTCCcccca gtttttCCCCCCA gtTTTTCCCccca gttttTCCCCCCA gtttttCCCCCCA gttttTCCCCCCA gtttttCCCCCCA |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N |
0.049 -0.291 0.026 -0.614 -0.302 -0.603 -0.358 |
T |
hsa-miR-1275 hsa-miR-4525 hsa-miR-4665-5p hsa-miR-4723-5p hsa-miR-5010-5p hsa-miR-5698 hsa-miR-625-5p hsa-miR-6870-5p hsa-miR-7111-5p |
1 1 1 1 1 1 1 1 1 |
gtttttTCCCCCA gtttttTCCCCCA gtttttTCCCCCA gtttttTCCCCCA gtttttTCCCCCA gtttttTCCCCCA gttttTTCCCCCA gtttttTCCCCCA gtttttTCCCCCA |
Created Created Created Created Created Created Created Created Created |
N N N N N N N N N |
-0.305 -0.255 -0.277 -0.248 -0.265 -0.251 -0.211 -0.248 -0.251 |
|||
165773088 | rs3836432 | - | - |
hsa-miR-3148 hsa-miR-328-5p hsa-miR-4668-5p hsa-miR-625-5p hsa-miR-6795-5p hsa-miR-6885-5p hsa-miR-6887-5p hsa-miR-7109-5p |
3 1 1 1 1 1 1 1 |
gTTTTTCCcccca gtttttCCCCCCA gtTTTTCCCccca gtttTTCCCCCca gttttTCCCCCCA gtttttCCCCCCA gttttTCCCCCCA gtttttCCCCCCA |
Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown |
N N N N N N N N |
0.038 0.005 0.009 0.003 -0.009 0.001 0.002 0.002 |
T | |||||||||
165773089 | rs17846900 | - | - |
hsa-miR-3148 hsa-miR-4668-5p hsa-miR-548ae hsa-miR-548ah-3p hsa-miR-548aj-3p hsa-miR-548am-3p hsa-miR-548aq-3p hsa-miR-548j-3p hsa-miR-548x-3p hsa-miR-625-5p hsa-miR-6795-5p hsa-miR-6887-5p |
3 1 0 0 0 0 0 0 0 1 1 1 |
agTTTTTCCcccc agtTTTTCCCccc AGTTTTTcccccc AGTTTTTcccccc AGTTTTTcccccc AGTTTTTcccccc AGTTTTTcccccc AGTTTTTcccccc AGTTTTTcccccc agtttTTCCCCCc agttttTCCCCCC agttttTCCCCCC |
Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown |
N N N N N N N N N N N N |
0.038 0.009 0.02 0.02 0.02 0.02 0.02 0.02 0.02 0.003 -0.009 0.002 |
T | |||||||||
165773326 | rs191995340 | C | C |
hsa-miR-3145-3p |
7 |
AAATATCAggagc |
Disrupted |
N |
-0.169 |
G |
hsa-miR-1279 hsa-miR-4268 hsa-miR-6072 hsa-miR-6891-3p |
7 12 2 2 |
aAATATGAggagc aaatatGAGGAGC aaatATGAGGAgc aaatATGAGGAgc |
Created Created Created Created |
N N N N |
-0.029 -0.35 -0.158 -0.158 |
|||
165773329 | rs201751925 | - | TTAGATCAAGGCAAAAAT |
hsa-miR-3145-3p |
7 |
tttcctttagatcaaggcaaAAATATCAggagcttttttacacacct |
Unknown |
N |
-0.169 |
- |
hsa-miR-3650 |
7 |
tttcctatcaggagcttttttACACACCt |
Unknown |
N |
-0.004 |