SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_001170714
Gene Symbol: BCAR1
Description: Homo sapiens breast cancer anti-estrogen resistance 1 (BCAR1), transcript variant 1, mRNA.
Gene Location: chr16(-):75262927-75299905
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr16:g.75229267G>A COSN14896946 LP6005500-DNA_B03 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-490-3p cacgggcCCAGGTTGggtc
0 CAACCUGG m8a Created no TS -0.047000 -1.270000

Mutation Mutation ID Sample Name Cancer Type
chr16:g.75229395G>T COSN1190632 HCC29T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-873-5p tctgcgtcGTTCCTGgtgc
0 GCAGGAAC m7b Created no TS -0.090000 -9.200000
hsa-miR-873-5p tctgcgtcGTTCCTGgtgc
0 GCAGGAAC m7b Created no TS -0.090000 -9.200000
hsa-miR-873-5p tctgcgtcGTTCCTGgtgc
0 GCAGGAAC m7b Created no TS -0.090000 -9.200000
hsa-miR-873-5p tctgcgtcGTTCCTGgtgc
0 GCAGGAAC m7b Created no TS -0.090000 -9.200000
hsa-miR-873-5p tctgcgtcGTTCCTGgtgc
0 GCAGGAAC m7b Created no TS -0.09 -9.2

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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