| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_003658 |
|---|---|
| Gene Symbol: | BARX2 |
| Description: | Homo sapiens BARX homeobox 2 (BARX2), mRNA. |
| Gene Location: | chr11(+):129245880-129322174 |
| Browse Associations | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr11:g.129451572A>T | COSN8641140 | 227_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-105-5p |
aaGCATTTGAcaaagactt |
6 |
UCAAAUGC | m8a | (m8a->m7a) | -0.215000 | -0.117000 |
1.220000 |
| hsa-miR-514a-3p |
aagcattTGTCAAagactt |
0 | AUUGACAC | m6b | Created | no TS | -0.069000 |
-1.135000 |
| hsa-miR-514b-3p |
aagcattTGTCAAagactt |
0 | AUUGACAC | m6b | Created | no TS | -0.069000 |
-2.780000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr11:g.129451590T>C | COSN5899353 | RK193_C01 | [liver][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3136-3p |
tgcttgtcTTGGGCCtgtc |
0 | UGGCCCAA | m7b | Disrupted | -0.204000 | no TS |
8.630000 |
| hsa-miR-4740-3p |
tgcttgTCTCGGGCctgtc |
0 | GCCCGAGA | m8a | Created | no TS | -0.223000 |
-2.520000 |
| hsa-miR-4747-3p |
tgcttgtctCGGGCCTgtc |
0 | AAGGCCCG | m7b | (m6c->m7b) | no TS | -0.275000 |
-2.620000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr11:g.129451599C>G | COSN6992297 | 8066067 | [pancreas][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3689d |
tgggcctgtCACCTCCtga |
0 | GGGAGGUG | m7b | (m7b->m6c) | -0.204000 | no TS |
0.060000 |
| hsa-miR-4438 |
tggGCCTGTGacctcctga |
0 | CACAGGCU | m7a | (m6a->m7a) | NA | NA |
0.810000 |
| hsa-miR-513a-5p |
tgggCCTGTGAcctcctga |
0 | UUCACAGG | m7b | Created | no TS | -0.077000 |
-6.450000 |
| hsa-miR-542-3p |
tgggcCTGTCACctcctga |
1 |
UGUGACAG | m7b | Disrupted | -0.092000 | no TS |
1.050000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr11:g.129451651C>T | COSN10080728 | C0021T | [kidney][NS][other][neoplasm] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3622a-5p |
gggagagaGTGCCTaggag |
0 | CAGGCACG | m6b | Created | no TS | -0.137000 |
-3.620000 |
| hsa-miR-4423-3p |
gggagagaGTGCCTAggag |
0 | AUAGGCAC | m7b | Created | no TS | -0.131000 |
-0.350000 |
| hsa-miR-4639-3p |
gggaGAGAGTGcctaggag |
0 | UCACUCUC | m7b | Created | no TS | -0.129000 |
-0.010000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr11:g.129452173T>C | 10_614 | 6408 | Breast cancer | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-125b-2-3p |
taaaaaacACTTGTGAcct |
5 |
UCACAAGU | m8a | Created | no TS | -0.275 |
-2.68 |
| hsa-miR-33a-3p |
taaaAAACATTtgtgacct |
5 |
CAAUGUUU | m7b | Disrupted | -0.089 | no TS |
0.62 |
| hsa-miR-4307 |
taaAAAACATTtgtgacct |
5 |
AAUGUUUU | m8a | Disrupted | -0.012 | 0.09 |
-0.82 |
| hsa-miR-4719 |
taaaaaacATTTGTGAcct |
5 |
UCACAAAU | m8a | Disrupted | -0.178 | no TS |
-1.5 |