SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_015570 |
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Gene Symbol: | AUTS2 |
Description: | Homo sapiens autism susceptibility candidate 2 (AUTS2), transcript variant 2, mRNA. |
Gene Location: | chr7(+):69063905-70257885 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.70791162A>G | COSN2233424 | RK014_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-let-7a-3p |
atgttTTGTATAttatatg |
17 |
CUAUACAA | m7b | Disrupted | -0.144000 | no TS |
-0.280000 |
|
hsa-let-7b-3p |
atgttTTGTATAttatatg |
17 |
CUAUACAA | m7b | Disrupted | -0.144000 | no TS |
-0.020000 |
|
hsa-let-7f-1-3p |
atgttTTGTATAttatatg |
17 |
CUAUACAA | m7b | Disrupted | -0.163000 | no TS |
-1.110000 |
|
hsa-miR-1277-5p |
atgttttgTATATTatatg |
13 |
AAAUAUAU | m6b | Disrupted | 0.199000 | 0.193000 |
1.450000 |
|
hsa-miR-369-3p |
atgttttgtGTATTATatg |
11 |
AAUAAUAC | m7b | (m6c->m7b) | 0.005000 | -0.168000 |
-0.770000 |
|
hsa-miR-374c-5p |
atgttttgTGTATTATatg |
0 | AUAAUACA | m8a | Created | no TS | -0.081000 |
-0.660000 |
|
hsa-miR-4666a-3p |
atgttTTGTATattatatg |
17 |
CAUACAAU | m6b | Disrupted | -0.057000 | no TS |
0.380000 |
|
hsa-miR-4731-3p |
atgttTTGTGTattatatg |
13 |
CACACAAG | m6b | Created | -0.376000 | -0.478000 | No effect | |
hsa-miR-5692b |
atgttttgtATATTATatg |
11 |
AAUAAUAU | m7b | (m7b->m6c) | -0.099000 | 0.009000 | No effect | |
hsa-miR-5692c |
atgttttgtATATTATatg |
11 |
AAUAAUAU | m7b | (m7b->m6c) | -0.099000 | 0.009000 |
-0.050000 |
|
hsa-miR-655 |
atgttttgTGTATTATatg |
0 | AUAAUACA | m8a | Created | no TS | -0.127000 |
-1.430000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.70791202A>G | COSN15032743 | LP6005409-DNA_H01 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-5580-3p |
agcccagtCATATGTtctc |
5 |
CACAUAUG | m7b | Disrupted | -0.110000 | -0.024000 |
0.020000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.70791218C>G | COSN8517544 | 3498_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4771 |
ctcacGTCTGCTacttttt |
0 | AGCAGACU | m7a | Created | NA | NA |
-1.110000 |
|
hsa-miR-562 |
ctcacgtctGCTACTTTtt |
0 | AAAGUAGC | m8a | (m7b->m8a) | no TS | -0.194000 |
-0.070000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.70791378T>A | COSN1353060 | HCC82T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-602 |
aaggCCGTGTacatagtta |
0 | GACACGGG | m6b | Disrupted | -0.181000 | no TS |
6.940000 |
|
hsa-miR-602 |
aaggCCGTGTacatagtta |
0 | GACACGGG | m6b | Disrupted | -0.181 | no TS |
6.94 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.70791569T>C | COSN6890321 | RK308_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1277-5p |
gttcccATATATTgttata |
13 |
AAAUAUAU | m7b | Disrupted | 0.199000 | 0.069000 | No effect | |
hsa-miR-3115 |
gttCCCATATattgttata |
0 | AUAUGGGU | m7a | (m7a->m6a) | NA | NA |
0.850000 |
|
hsa-miR-338-5p |
gttcccatATATTGTTata |
18 |
AACAAUAU | m8a | Disrupted | -0.067000 | -0.030000 |
0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.70791819C>G | COSN8037228 | 8057484 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-361-3p |
ttgtgggctCTGGGGGAaa |
0 | UCCCCCAG | m8a | (m8a->m7b) | -0.470000 | -0.333000 | No effect | |
hsa-miR-4690-3p |
ttgTGGGCTGtgggggaaa |
0 | GCAGCCCA | m7b | (m6b->m7b) | no TS | -0.083000 |
-0.020000 |
|
hsa-miR-5685 |
ttgTGGGCTGTgggggaaa |
0 | ACAGCCCA | m8a | Created | no TS | -0.046000 |
-0.050000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.70792149T>G | COSN8037229 | 8052570 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.70792518G>A | COSN8517545 | J73_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-20b-3p |
ttaACTACAGaccattgtt |
0 | ACUGUAGU | m7b | (m7b->m6b) | -0.321000 | no TS |
5.862500 |
|
hsa-miR-3674 |
ttaaCTACAAaccattgtt |
0 | AUUGUAGA | m6b | Created | no TS | -0.079000 |
-1.600000 |
|
hsa-miR-5087 |
ttaactACAAACCattgtt |
0 | GGGUUUGU | m7b | Created | no TS | -0.330000 |
-1.080000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr7:g.70792612G>A | COSN4871345 | tumor_4177376 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-141-3p |
atgttgtgCAGTGTTtttt |
0 | UAACACUG | m7b | Created | no TS | -0.154000 |
-0.010000 |
hsa-miR-200a-3p |
atgttgtgCAGTGTTtttt |
0 | UAACACUG | m7b | Created | no TS | -0.163000 |
-0.090000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
70791090 | rs188289236 | - | T |
hsa-miR-361-3p hsa-miR-622 |
3 5 |
acagaCTGGGGGg aCAGACTGggggg |
Unknown Unknown |
N N |
-0.25 -0.12 |
70791092 | rs191344881 | G | G |
hsa-miR-361-3p |
3 |
agaCTGGGGGgga |
Disrupted |
N |
-0.066 |