SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_032279
Gene Symbol: ATP13A4
Description: Homo sapiens ATPase type 13A4 (ATP13A4), mRNA.
Gene Location: chr3(-):193119865-193272696
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.193402145C>A COSN7599263 8067246 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-15a-3p cttctgtttATGGCCTtac
 0 CAGGCCAU m7b (m6b->m7b) no TS -0.264000 -3.600000

Mutation Mutation ID Sample Name Cancer Type
chr3:g.193402640T>A COSN5042349 HCC17T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1261 gacatgtgaTATCCAagtt
 2
 AUGGAUAA m6b Disrupted 0.000000 no TS No effect
hsa-miR-1290 gacatgtgAAATCCAagtt
 0 UGGAUUUU m7a Created no TS 0.000000 No effect
hsa-miR-130a-5p gacATGTGAAatccaagtt
 0 UUCACAUU m7a (m6b->m7a) no TS 0.000000 No effect
hsa-miR-144-5p gacatgTGATATCCaagtt
 0 GGAUAUCA m8a Disrupted 0.000000 no TS -0.110000
hsa-miR-23a-3p gacATGTGATatccaagtt
 0 AUCACAUU m7a (m7a->m6b) no TS 0.000000 No effect
hsa-miR-23b-3p gacATGTGATatccaagtt
 0 AUCACAUU m7a (m7a->m6b) no TS 0.000000 No effect
hsa-miR-23c gacATGTGATatccaagtt
 0 AUCACAUU m7a (m7a->m6b) no TS 0.000000 No effect
hsa-miR-3167 gacatgtGAAATCCaagtt
 0 AGGAUUUC m7b Created no TS 0.000000 No effect
hsa-miR-3201 gacatgtgATATCCaagtt
 2
 GGGAUAUG m6b Disrupted 0.000000 no TS No effect
hsa-miR-4791 gacatgtgATATCCAagtt
 2
 UGGAUAUG m7a Disrupted 0.000000 no TS No effect
hsa-miR-5004-3p gacatgtgaAATCCAAGtt
 0 CUUGGAUU m8a (m7a->m8a) no TS 0.000000 No effect
hsa-miR-876-5p gacatgtGAAATCCAagtt
 0 UGGAUUUC m8a Created no TS 0.000000 No effect
hsa-miR-1261 gacatgtgaTATCCAagtt
 2
 AUGGAUAA m6b Disrupted 0.000000 no TS No effect
hsa-miR-1290 gacatgtgAAATCCAagtt
 0 UGGAUUUU m7a Created no TS 0.000000 No effect
hsa-miR-130a-5p gacATGTGAAatccaagtt
 0 UUCACAUU m7a (m6b->m7a) no TS 0.000000 No effect
hsa-miR-144-5p gacatgTGATATCCaagtt
 0 GGAUAUCA m8a Disrupted 0.000000 no TS -0.110000
hsa-miR-23a-3p gacATGTGATatccaagtt
 0 AUCACAUU m7a (m7a->m6b) no TS 0.000000 No effect
hsa-miR-23b-3p gacATGTGATatccaagtt
 0 AUCACAUU m7a (m7a->m6b) no TS 0.000000 No effect
hsa-miR-23c gacATGTGATatccaagtt
 0 AUCACAUU m7a (m7a->m6b) no TS 0.000000 No effect
hsa-miR-3167 gacatgtGAAATCCaagtt
 0 AGGAUUUC m7b Created no TS 0.000000 No effect
hsa-miR-3201 gacatgtgATATCCaagtt
 2
 GGGAUAUG m6b Disrupted 0.000000 no TS No effect
hsa-miR-4791 gacatgtgATATCCAagtt
 2
 UGGAUAUG m7a Disrupted 0.000000 no TS No effect
hsa-miR-5004-3p gacatgtgaAATCCAAGtt
 0 CUUGGAUU m8a (m7a->m8a) no TS 0.000000 No effect
hsa-miR-876-5p gacatgtGAAATCCAagtt
 0 UGGAUUUC m8a Created no TS 0.000000 No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Genome Browser