SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_024490
Gene Symbol: ATP10A
Description: Homo sapiens ATPase, class V, type 10A (ATP10A), mRNA.
Gene Location: chr15(-):25923859-26108349
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr15:g.25679300T>C COSN7039845 8057528 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1179 aaataAATGCTaatattat
 0 AAGCAUUC m6b Created no TS -0.166000 -0.070000
hsa-miR-302c-5p aaataaATGTTAAtattat
 6
 UUUAACAU m7b Disrupted -0.226000 -0.021000 0.110000
hsa-miR-3143 aaataAATGTTAatattat
 4
 AUAACAUU m7b Disrupted -0.274000 no TS 3.680000
hsa-miR-543 aaataAATGTTaatattat
 4
 AAACAUUC m6b Disrupted -0.081000 no TS 0.050000

Mutation Mutation ID Sample Name Cancer Type
chr15:g.25679319T>A COSN8407426 B89-3-Tumor [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-656 ggcctttttTAATATatat
 0 AAUAUUAU m6b Disrupted -0.045000 no TS 0.320000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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