SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_007041
Gene Symbol: ATE1
Description: Homo sapiens arginyltransferase 1 (ATE1), transcript variant 1, mRNA.
Gene Location: chr10(-):123502624-123687546
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr10:g.121743464C>T COSN4711939 tumor_4177856 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-135a-3p cctagcCCCTATAattggg
 0 UAUAGGGA m7a Created no TS -0.164000 -7.390000
hsa-miR-185-3p cctAGCCCCTataattggg
 0 AGGGGCUG m7a (m6b->m7a) NA NA -1.490000
hsa-miR-3115 cctagccCCCATAattggg
 2
 AUAUGGGU m6b Disrupted -0.161000 no TS 1.710000
hsa-miR-3675-5p cctagcCCCCATAattggg
 2
 UAUGGGGC m7a Disrupted -0.189000 no TS 0.130000
hsa-miR-4488 cctaGCCCCCataattggg
 2
 AGGGGGCG m6b Disrupted -0.271000 no TS 12.810000
hsa-miR-4697-5p cctaGCCCCCataattggg
 2
 AGGGGGCG m6b Disrupted -0.281000 no TS 13.410000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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