| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_001197325 |
|---|---|
| Gene Symbol: | ARNT |
| Description: | Homo sapiens aryl hydrocarbon receptor nuclear translocator (ARNT), transcript variant 4, mRNA. |
| Gene Location: | chr1(-):150782180-150849244 |
| Browse Associations | |
| Browse Pathways | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr1:g.150809830G>A | COSN15010038 | LP6005409-DNA_A02 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-574-3p |
tttggggTGAGCGTtgcct |
0 | CACGCUCA | m7b | Created | no TS | -0.201000 |
-2.010000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr1:g.150810016G>A | COSN8642082 | AOCS-086-3-2 | [ovary][NS][other][neoplasm] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-145-3p |
acaaccagAGGAATCtata |
0 | GGAUUCCU | m7b | Disrupted | -0.469000 | -0.339000 |
1.900000 |
| hsa-miR-3182 |
acaacCAGAAGaatctata |
0 | GCUUCUGU | m6b | Created | no TS | -0.080000 |
-2.350000 |
| hsa-miR-326 |
acaaCCAGAGGaatctata |
0 | CCUCUGGG | m7a | Disrupted | NA | NA |
2.360000 |
| hsa-miR-4659a-3p |
acaaccAGAAGAAtctata |
4 |
UUUCUUCU | m7b | Created | -0.286000 | -0.327000 |
-0.030000 |
| hsa-miR-4659b-3p |
acaaccAGAAGAAtctata |
4 |
UUUCUUCU | m7b | Created | -0.286000 | -0.327000 |
-0.590000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr1:g.150810430T>A | COSN7177113 | 8030340 | [pancreas][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-376a-3p |
tatTCTATGAgcacactta |
0 | AUCAUAGA | m7b | (m6c->m7b) | no TS | -0.153000 |
-8.510000 |
| hsa-miR-376b |
tatTCTATGAgcacactta |
0 | AUCAUAGA | m7b | (m6c->m7b) | no TS | -0.153000 |
-5.440000 |
| hsa-miR-376c |
tatTCTATGTgcacactta |
15 |
AACAUAGA | m7b | (m7b->m6c) | -0.120000 | no TS |
2.680000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr1:g.150811479A>G | COSN6507075 | CHC322T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3941 |
tgtGTGTGTAtgtgtgtgt |
0 | UUACACAC | m7b | (m7b->m6c) | -0.075000 | no TS | No effect |
| hsa-miR-4789-3p |
tgtgtgtgTATGTGTGtgt |
0 | CACACAUA | m8a | Disrupted | 0.025000 | no TS |
-0.010000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr1:g.150811649G>A | COSN8642083 | AOCS-166-1-2 | [ovary][NS][other][neoplasm] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3124-3p |
ttttGGAAAGaaattctga |
8 |
ACUUUCCU | m6b | Disrupted | -0.083000 | -0.010000 |
-0.110000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr1:g.150811660G>T | 9_127929 | CRC-1-Tumor | Colorectal adenocarcinoma | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |