SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_001244638
Gene Symbol: ARID5B
Description: Homo sapiens AT rich interactive domain 5B (MRF1-like) (ARID5B), transcript variant 2, mRNA.
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr10:g.62093348G>T COSN1496791 RK089_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4330 cccATCTGAGttcggatgg
0 CCUCAGAU m7b (m7b->m6b) -0.189000 -0.112000 0.150000
hsa-miR-4330 cccATCTGAGttcggatgg
0 CCUCAGAU m7b (m7b->m6b) -0.189 -0.112 0.15

Mutation Mutation ID Sample Name Cancer Type
chr10:g.62093481A>C COSN5289129 RK155_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-let-7f-2-3p atcaatgcaCTGTATAGtg
0 CUAUACAG m8a (m7b->m8a) -0.111000 -0.191000 -0.050000
hsa-miR-1185-1-3p atcaatgcaCTGTATAgtg
0 AUAUACAG m7b (m6c->m7b) -0.129000 -0.209000 -0.170000
hsa-miR-1185-2-3p atcaatgcaCTGTATAgtg
0 AUAUACAG m7b (m6c->m7b) -0.129000 -0.209000 -0.650000
hsa-miR-148a-3p atcaaTGCACTGtatagtg
0 UCAGUGCA m7b Created -0.050000 -0.320000 -6.420000
hsa-miR-148b-3p atcaaTGCACTGtatagtg
0 UCAGUGCA m7b Created -0.050000 -0.320000 -5.850000
hsa-miR-152 atcaaTGCACTGtatagtg
0 UCAGUGCA m7b Created -0.050000 -0.320000 -5.890000
hsa-miR-33a-5p atCAATGCACtgtatagtg
0 GUGCAUUG m8a (m7a->m8a) -0.294000 -0.168000 0.460000
hsa-miR-33b-5p atCAATGCACtgtatagtg
0 GUGCAUUG m8a (m7a->m8a) -0.294000 -0.168000 1.420000
hsa-miR-4317 atcaatGCAATGTatagtg
0 ACAUUGCC m7a Disrupted -0.084000 -0.084000 1.950000

Mutation Mutation ID Sample Name Cancer Type
chr10:g.62093908A>T COSN1496792 RK046_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-382-5p tagatccgCAACTTaagga
0 GAAGUUGU m6b Disrupted -0.063000 -0.083000 0.010000
hsa-miR-4754 tagaTCCGCAacttaagga
0 AUGCGGAC m6b Disrupted -0.190000 no TS 4.410000
hsa-miR-562 tagatccGCTACTTaagga
0 AAAGUAGC m7b Created no TS -0.108000 -0.010000
hsa-miR-382-5p tagatccgCAACTTaagga
0 GAAGUUGU m6b Disrupted -0.063 -0.083 0.01
hsa-miR-4754 tagaTCCGCAacttaagga
0 AUGCGGAC m6b Disrupted -0.19 no TS 4.41
hsa-miR-562 tagatccGCTACTTaagga
0 AAAGUAGC m7b Created no TS -0.108 -0.01

Mutation Mutation ID Sample Name Cancer Type
chr10:g.62095381A>G COSN10070896 C0002T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-204-5p aaaaaaAAAGGGAgggggg
0 UUCCCUUU m7b Created no TS 0.115000 No effect
hsa-miR-211-5p aaaaaaAAAGGGAgggggg
0 UUCCCUUU m7b Created no TS 0.096000 No effect
hsa-miR-4287 aaaaaaaAAGGGAGggggg
0 UCUCCCUU m7b Created no TS 0.052000 -2.030000
hsa-miR-4667-3p aaaaaaaaaAGGAGGGggg
0 UCCCUCCU m7b (m7b->m6c) -0.008000 no TS No effect
hsa-miR-4685-3p aaaaaaaAAGGGAGggggg
0 UCUCCCUU m7b Created no TS 0.043000 No effect


Mutation Mutation ID Sample Name Cancer Type
chr10:g.62095585C>A 0_356 Lung cancer
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr10:g.62095881G>C COSN8716005 AOCS-130-1-0 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1273g-3p ttgGCAGTGGagtcataaa
0 ACCACUGC m7b (m7b->m6b) -0.140000 no TS 0.010000
hsa-miR-181a-2-3p ttggCAGTGGagtcataaa
0 ACCACUGA m6b Disrupted -0.045000 no TS -0.010000
hsa-miR-4793-3p ttggcAGTGCAGtcataaa
0 UCUGCACU m7b Created -0.023000 -0.065000 -4.490000

Mutation Mutation ID Sample Name Cancer Type
chr10:g.62095898A>C COSN10070897 C0061T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3121-3p aaTCTATTTActgagtgtg
0 UAAAUAGA m8a (m8a->m7a) 0.105000 0.092000 No effect
hsa-miR-3664-3p aatctattTCCTGAGtgtg
0 UCUCAGGA m7b Created no TS -0.121000 No effect
hsa-miR-4797-3p aatctattTACTGAGtgtg
0 UCUCAGUA m7b Disrupted -0.062000 no TS 0.240000
hsa-miR-510 aatctatttCCTGAGTgtg
0 UACUCAGG m7b (m6c->m7b) no TS -0.092000 -0.060000
hsa-miR-545-5p aatctaTTTACTGAgtgtg
0 UCAGUAAA m8a Disrupted -0.032000 no TS 0.010000
hsa-miR-873-5p aatctatTTCCTGagtgtg
0 GCAGGAAC m6b Created no TS 0.000000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr10:g.62096355C>T COSN1496793 RK001_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1302 ttcacttatTGTCCCAcaa
0 UUGGGACA m7b (m6c->m7b) -0.372000 -0.588000 -0.600000
hsa-miR-4298 ttcacttatTGTCCCAcaa
0 CUGGGACA m7b (m6c->m7b) -0.383000 -0.599000 -0.230000
hsa-miR-92b-5p ttcacttatCGTCCCacaa
0 AGGGACGG m6b Disrupted -0.208000 no TS No effect
hsa-miR-1302 ttcacttatTGTCCCAcaa
0 UUGGGACA m7b (m6c->m7b) -0.372 -0.588 -0.6
hsa-miR-4298 ttcacttatTGTCCCAcaa
0 CUGGGACA m7b (m6c->m7b) -0.383 -0.599 -0.23
hsa-miR-92b-5p ttcacttatCGTCCCacaa
0 AGGGACGG m6b Disrupted -0.208 no TS No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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