SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001244638 |
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Gene Symbol: | ARID5B |
Description: | Homo sapiens AT rich interactive domain 5B (MRF1-like) (ARID5B), transcript variant 2, mRNA. |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.62093348G>T | COSN1496791 | RK089_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4330 |
cccATCTGAGttcggatgg |
0 | CCUCAGAU | m7b | (m7b->m6b) | -0.189000 | -0.112000 |
0.150000 |
hsa-miR-4330 |
cccATCTGAGttcggatgg |
0 | CCUCAGAU | m7b | (m7b->m6b) | -0.189 | -0.112 |
0.15 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.62093481A>C | COSN5289129 | RK155_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-let-7f-2-3p |
atcaatgcaCTGTATAGtg |
0 | CUAUACAG | m8a | (m7b->m8a) | -0.111000 | -0.191000 |
-0.050000 |
hsa-miR-1185-1-3p |
atcaatgcaCTGTATAgtg |
0 | AUAUACAG | m7b | (m6c->m7b) | -0.129000 | -0.209000 |
-0.170000 |
hsa-miR-1185-2-3p |
atcaatgcaCTGTATAgtg |
0 | AUAUACAG | m7b | (m6c->m7b) | -0.129000 | -0.209000 |
-0.650000 |
hsa-miR-148a-3p |
atcaaTGCACTGtatagtg |
0 | UCAGUGCA | m7b | Created | -0.050000 | -0.320000 |
-6.420000 |
hsa-miR-148b-3p |
atcaaTGCACTGtatagtg |
0 | UCAGUGCA | m7b | Created | -0.050000 | -0.320000 |
-5.850000 |
hsa-miR-152 |
atcaaTGCACTGtatagtg |
0 | UCAGUGCA | m7b | Created | -0.050000 | -0.320000 |
-5.890000 |
hsa-miR-33a-5p |
atCAATGCACtgtatagtg |
0 | GUGCAUUG | m8a | (m7a->m8a) | -0.294000 | -0.168000 |
0.460000 |
hsa-miR-33b-5p |
atCAATGCACtgtatagtg |
0 | GUGCAUUG | m8a | (m7a->m8a) | -0.294000 | -0.168000 |
1.420000 |
hsa-miR-4317 |
atcaatGCAATGTatagtg |
0 | ACAUUGCC | m7a | Disrupted | -0.084000 | -0.084000 |
1.950000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.62093908A>T | COSN1496792 | RK046_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-382-5p |
tagatccgCAACTTaagga |
0 | GAAGUUGU | m6b | Disrupted | -0.063000 | -0.083000 |
0.010000 |
hsa-miR-4754 |
tagaTCCGCAacttaagga |
0 | AUGCGGAC | m6b | Disrupted | -0.190000 | no TS |
4.410000 |
hsa-miR-562 |
tagatccGCTACTTaagga |
0 | AAAGUAGC | m7b | Created | no TS | -0.108000 |
-0.010000 |
hsa-miR-382-5p |
tagatccgCAACTTaagga |
0 | GAAGUUGU | m6b | Disrupted | -0.063 | -0.083 |
0.01 |
hsa-miR-4754 |
tagaTCCGCAacttaagga |
0 | AUGCGGAC | m6b | Disrupted | -0.19 | no TS |
4.41 |
hsa-miR-562 |
tagatccGCTACTTaagga |
0 | AAAGUAGC | m7b | Created | no TS | -0.108 |
-0.01 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.62095381A>G | COSN10070896 | C0002T | [kidney][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-204-5p |
aaaaaaAAAGGGAgggggg |
0 | UUCCCUUU | m7b | Created | no TS | 0.115000 | No effect |
hsa-miR-211-5p |
aaaaaaAAAGGGAgggggg |
0 | UUCCCUUU | m7b | Created | no TS | 0.096000 | No effect |
hsa-miR-4287 |
aaaaaaaAAGGGAGggggg |
0 | UCUCCCUU | m7b | Created | no TS | 0.052000 |
-2.030000 |
hsa-miR-4667-3p |
aaaaaaaaaAGGAGGGggg |
0 | UCCCUCCU | m7b | (m7b->m6c) | -0.008000 | no TS | No effect |
hsa-miR-4685-3p |
aaaaaaaAAGGGAGggggg |
0 | UCUCCCUU | m7b | Created | no TS | 0.043000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.62095585C>A | 0_356 | Lung cancer | ||||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.62095881G>C | COSN8716005 | AOCS-130-1-0 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1273g-3p |
ttgGCAGTGGagtcataaa |
0 | ACCACUGC | m7b | (m7b->m6b) | -0.140000 | no TS |
0.010000 |
hsa-miR-181a-2-3p |
ttggCAGTGGagtcataaa |
0 | ACCACUGA | m6b | Disrupted | -0.045000 | no TS |
-0.010000 |
hsa-miR-4793-3p |
ttggcAGTGCAGtcataaa |
0 | UCUGCACU | m7b | Created | -0.023000 | -0.065000 |
-4.490000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.62095898A>C | COSN10070897 | C0061T | [kidney][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3121-3p |
aaTCTATTTActgagtgtg |
0 | UAAAUAGA | m8a | (m8a->m7a) | 0.105000 | 0.092000 | No effect |
hsa-miR-3664-3p |
aatctattTCCTGAGtgtg |
0 | UCUCAGGA | m7b | Created | no TS | -0.121000 | No effect |
hsa-miR-4797-3p |
aatctattTACTGAGtgtg |
0 | UCUCAGUA | m7b | Disrupted | -0.062000 | no TS |
0.240000 |
hsa-miR-510 |
aatctatttCCTGAGTgtg |
0 | UACUCAGG | m7b | (m6c->m7b) | no TS | -0.092000 |
-0.060000 |
hsa-miR-545-5p |
aatctaTTTACTGAgtgtg |
0 | UCAGUAAA | m8a | Disrupted | -0.032000 | no TS |
0.010000 |
hsa-miR-873-5p |
aatctatTTCCTGagtgtg |
0 | GCAGGAAC | m6b | Created | no TS | 0.000000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr10:g.62096355C>T | COSN1496793 | RK001_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1302 |
ttcacttatTGTCCCAcaa |
0 | UUGGGACA | m7b | (m6c->m7b) | -0.372000 | -0.588000 |
-0.600000 |
hsa-miR-4298 |
ttcacttatTGTCCCAcaa |
0 | CUGGGACA | m7b | (m6c->m7b) | -0.383000 | -0.599000 |
-0.230000 |
hsa-miR-92b-5p |
ttcacttatCGTCCCacaa |
0 | AGGGACGG | m6b | Disrupted | -0.208000 | no TS | No effect |
hsa-miR-1302 |
ttcacttatTGTCCCAcaa |
0 | UUGGGACA | m7b | (m6c->m7b) | -0.372 | -0.588 |
-0.6 |
hsa-miR-4298 |
ttcacttatTGTCCCAcaa |
0 | CUGGGACA | m7b | (m6c->m7b) | -0.383 | -0.599 |
-0.23 |
hsa-miR-92b-5p |
ttcacttatCGTCCCacaa |
0 | AGGGACGG | m6b | Disrupted | -0.208 | no TS | No effect |