| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_001011722 |
|---|---|
| Gene Symbol: | ARHGEF10L |
| Description: | Homo sapiens Rho guanine nucleotide exchange factor (GEF) 10-like (ARHGEF10L), transcript variant 2, mRNA. |
| Gene Location: | chr1(+):17907047-18024370 |
| Browse Associations | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr1:g.17697430A>G | COSN9367522 | C0056T | [kidney][NS][other][neoplasm] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-1204 |
accaaGGCCACGcccggct |
0 | UCGUGGCC | m7b | Disrupted | -0.278000 | no TS |
1.790000 |
| hsa-miR-1268a |
accaaggcCACGCCCGgct |
0 | CGGGCGUG | m8a | Disrupted | -0.463000 | -0.245000 |
0.720000 |
| hsa-miR-1268b |
accaaggcCACGCCCGgct |
0 | CGGGCGUG | m8a | Disrupted | -0.463000 | -0.245000 |
0.720000 |
| hsa-miR-3178 |
accaaggcCGCGCCCggct |
0 | GGGGCGCG | m7b | Created | no TS | -0.242000 |
-5.080000 |
| hsa-miR-4479 |
accaagGCCGCGCccggct |
0 | CGCGCGGC | m7b | Created | no TS | -0.305000 |
-3.840000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr1:g.17697816T>C | COSN8636947 | J76_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-let-7a-2-3p |
taaagtCTGTACAtattgg |
12 |
CUGUACAG | m7b | Disrupted | -0.233000 | no TS |
0.110000 |
| hsa-let-7g-3p |
taaagtCTGTACAtattgg |
12 |
CUGUACAG | m7b | Disrupted | -0.233000 | no TS |
2.860000 |
| hsa-miR-143-5p |
taaagtCTGCACatattgg |
0 | GGUGCAGU | m6b | Created | no TS | -0.176000 |
-0.130000 |
| hsa-miR-3166 |
taaaGTCTGCacatattgg |
0 | CGCAGACA | m6b | Created | no TS | -0.204000 |
-0.010000 |
| hsa-miR-4771 |
taaAGTCTGCacatattgg |
0 | AGCAGACU | m7b | (m6b->m7b) | no TS | -0.526000 |
0.350000 |
| hsa-miR-499b-5p |
taAAGTCTGTacatattgg |
10 |
ACAGACUU | m8a | (m8a->m7a) | -0.259000 | -0.231000 |
1.310000 |