| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
| Home | Search | Help | Download | |||||
| RefSeq ID: | NM_001042669 |
|---|---|
| Gene Symbol: | ARHGAP24 |
| Description: | Homo sapiens Rho GTPase activating protein 24 (ARHGAP24), transcript variant 1, mRNA. |
| Gene Location: | chr4(+):86699850-86923823 |
| Browse Associations | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr4:g.86001455C>T | COSN9244330 | AOCS-004-1-5 | [ovary][NS][other][neoplasm] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-106b-3p |
tcctCAGTGCGtatcgcca |
1 |
CCGCACUG | m7b | Disrupted | -0.222000 | no TS |
2.160000 |
| hsa-miR-329 |
tcctcaGTGTGTatcgcca |
0 | AACACACC | m6b | Created | no TS | -0.005000 |
-5.620000 |
| hsa-miR-362-3p |
tcctcaGTGTGTatcgcca |
0 | AACACACC | m6b | Created | no TS | -0.012000 |
-1.850000 |
| hsa-miR-3941 |
tcctcaGTGTGTAtcgcca |
0 | UUACACAC | m7b | Created | no TS | -0.092000 |
-10.180000 |
| hsa-miR-521 |
tcctcAGTGCGTatcgcca |
1 |
AACGCACU | m7b | Disrupted | -0.282000 | no TS |
1.770000 |
| hsa-miR-603 |
tcctcAGTGTGTatcgcca |
0 | CACACACU | m7b | Created | no TS | -0.067000 |
-0.030000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr4:g.86001469A>C | COSN7846125 | 8035633 | [pancreas][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-1256 |
cgcCAATGCCggatgctcc |
0 | AGGCAUUG | m7b | (m6b->m7b) | no TS | -0.048000 | No effect |
| hsa-miR-20a-3p |
cgccAATGCAGgatgctcc |
2 |
ACUGCAUU | m7b | Disrupted | -0.019000 | no TS | No effect |
| hsa-miR-33a-5p |
cgcCAATGCAggatgctcc |
2 |
GUGCAUUG | m7b | (m7b->m6b) | -0.004000 | no TS |
0.120000 |
| hsa-miR-33b-5p |
cgcCAATGCAggatgctcc |
2 |
GUGCAUUG | m7b | (m7b->m6b) | -0.004000 | no TS |
0.050000 |
| hsa-miR-4304 |
cgccaATGCCGGatgctcc |
0 | CCGGCAUG | m7a | Created | NA | NA |
-4.530000 |
| hsa-miR-4793-5p |
cgccaatgCAGGATGctcc |
5 |
ACAUCCUG | m7b | Disrupted | -0.051000 | no TS |
3.160000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr4:g.86001503A>G | 9_108094 | CRC-9-Tumor | Colorectal adenocarcinoma | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-4252 |
tggtaaagAGTGGCattta |
9 |
GGCCACUG | m6b | Created | no TS | -0.125 |
-1.32 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr4:g.86001854C>T | COSN2048232 | RK024_C01 | [liver][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3943 |
ggaGGGGGCTAggctgcag |
0 | UAGCCCCC | m8a | Created | no TS | -0.340000 |
-4.400000 |
| hsa-miR-4313 |
ggAGGGGGCTaggctgcag |
0 | AGCCCCCU | m8a | (m7a->m8a) | -0.142000 | -0.169000 |
-1.640000 |
| hsa-miR-4323 |
ggagGGGGCTaggctgcag |
0 | CAGCCCCA | m6b | Created | no TS | -0.109000 |
-0.010000 |
| hsa-miR-3943 |
ggaGGGGGCTAggctgcag |
0 | UAGCCCCC | m8a | Created | no TS | -0.340000 |
-4.400000 |
| hsa-miR-4313 |
ggAGGGGGCTaggctgcag |
0 | AGCCCCCU | m8a | (m7a->m8a) | -0.142000 | -0.169000 |
-1.640000 |
| hsa-miR-4323 |
ggagGGGGCTaggctgcag |
0 | CAGCCCCA | m6b | Created | no TS | -0.109000 |
-0.010000 |
| hsa-miR-3943 |
ggaGGGGGCTAggctgcag |
0 | UAGCCCCC | m8a | Created | no TS | -0.34 |
-4.4 |
| hsa-miR-4313 |
ggAGGGGGCTaggctgcag |
0 | AGCCCCCU | m8a | (m7a->m8a) | -0.142 | -0.169 |
-1.64 |
| hsa-miR-4323 |
ggagGGGGCTaggctgcag |
0 | CAGCCCCA | m6b | Created | no TS | -0.109 |
-0.01 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr4:g.86002014A>G | COSN6846795 | RK212_C01 | [liver][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3180-5p |
taatttTCTGGAAaaaccc |
0 | CUUCCAGA | m7b | Created | no TS | -0.192000 |
-0.050000 |
| hsa-miR-4777-5p |
taatttTCTAGAAaaaccc |
6 |
UUCUAGAU | m7a | Disrupted | -0.046000 | no TS |
0.050000 |
| hsa-miR-518d-5p |
taatttTCTAGAaaaaccc |
6 |
CUCUAGAG | m6b | Disrupted | -0.054000 | no TS |
0.060000 |
| hsa-miR-518e-5p |
taatttTCTAGAaaaaccc |
6 |
CUCUAGAG | m6b | Disrupted | -0.047000 | no TS |
0.030000 |
| hsa-miR-518f-5p |
taatttTCTAGAaaaaccc |
6 |
CUCUAGAG | m6b | Disrupted | -0.054000 | no TS |
0.030000 |
| hsa-miR-519a-5p |
taatttTCTAGAaaaaccc |
6 |
CUCUAGAG | m6b | Disrupted | -0.047000 | no TS |
0.030000 |
| hsa-miR-519b-5p |
taatttTCTAGAaaaaccc |
6 |
CUCUAGAG | m6b | Disrupted | -0.047000 | no TS |
0.030000 |
| hsa-miR-519c-5p |
taatttTCTAGAaaaaccc |
6 |
CUCUAGAG | m6b | Disrupted | -0.047000 | no TS |
0.030000 |
| hsa-miR-520a-5p |
taatttTCTGGAaaaaccc |
0 | CUCCAGAG | m6b | Created | -0.047000 | -0.124000 | No effect |
| hsa-miR-520c-5p |
taatttTCTAGAaaaaccc |
6 |
CUCUAGAG | m6b | Disrupted | -0.054000 | no TS |
0.060000 |
| hsa-miR-522-5p |
taatttTCTAGAaaaaccc |
6 |
CUCUAGAG | m6b | Disrupted | -0.047000 | no TS |
0.030000 |
| hsa-miR-523-5p |
taatttTCTAGAaaaaccc |
6 |
CUCUAGAG | m6b | Disrupted | -0.047000 | no TS |
0.030000 |
| hsa-miR-525-5p |
taatttTCTGGAaaaaccc |
0 | CUCCAGAG | m6b | Created | -0.028000 | -0.112000 | No effect |
| hsa-miR-526a |
taatttTCTAGAaaaaccc |
6 |
CUCUAGAG | m6b | Disrupted | -0.054000 | no TS |
0.060000 |