SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001195254
Gene Symbol: APTX
Description: Homo sapiens aprataxin (APTX), transcript variant 6, mRNA.
Gene Location: chr9(-):32972603-33001610
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.32973392T>A COSN15418904 AOCS-139-19-0 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4307 attAAAACATgcagctttt
 11
 AAUGUUUU m7b (m7b->m6c) -0.076000 no TS 7.660000
hsa-miR-4666b attaaaACATGCAgctttt
 9
 UUGCAUGU m7b Disrupted -0.265000 no TS 11.390000
hsa-miR-4307 attAAAACATgcagctttt
 11
 AAUGUUUU m7b (m7b->m6c) -0.076000 no TS 7.660000
hsa-miR-4666b attaaaACATGCAgctttt
 9
 UUGCAUGU m7b Disrupted -0.265000 no TS 11.390000
hsa-miR-4307 attAAAACATgcagctttt
 11
 AAUGUUUU m7b (m7b->m6c) -0.076000 no TS 7.660000
hsa-miR-4666b attaaaACATGCAgctttt
 9
 UUGCAUGU m7b Disrupted -0.265000 no TS 11.390000
hsa-miR-4307 attAAAACATgcagctttt
 11
 AAUGUUUU m7b (m7b->m6c) -0.076000 no TS 7.660000
hsa-miR-4666b attaaaACATGCAgctttt
 9
 UUGCAUGU m7b Disrupted -0.265000 no TS 11.390000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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