SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_001641
Gene Symbol: APEX1
Description: Homo sapiens APEX nuclease (multifunctional DNA repair enzyme) 1 (APEX1), transcript variant 4, mRNA.
Gene Location: chr14(+):20923289-20925926
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr14:g.20457577C>A COSN1639515 RK082_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3659 ttaAACACTCttcagagaa
2
UGAGUGUU m7b (m7b->m6b) -0.248000 no TS 13.510000
hsa-miR-4427 ttaaacacTATTCAGAgaa
0 UCUGAAUA m8a Created no TS -0.231000 -3.850000
hsa-miR-4709-3p ttaaacaCTCTTCAgagaa
2
UUGAAGAG m7b Disrupted -0.179000 no TS 8.290000
hsa-miR-5187-3p ttaaacactATTCAGagaa
0 ACUGAAUC m6b Created no TS -0.080000 0.280000
hsa-miR-5585-3p ttaaacaCTATTCAGagaa
0 CUGAAUAG m8a Created no TS -0.148000 -4.100000
hsa-miR-3659 ttaAACACTCttcagagaa
2
UGAGUGUU m7b (m7b->m6b) -0.248000 no TS 13.510000
hsa-miR-4427 ttaaacacTATTCAGAgaa
0 UCUGAAUA m8a Created no TS -0.231000 -3.850000
hsa-miR-4709-3p ttaaacaCTCTTCAgagaa
2
UUGAAGAG m7b Disrupted -0.179000 no TS 8.290000
hsa-miR-5187-3p ttaaacactATTCAGagaa
0 ACUGAAUC m6b Created no TS -0.080000 0.280000
hsa-miR-5585-3p ttaaacaCTATTCAGagaa
0 CUGAAUAG m8a Created no TS -0.148000 -4.100000
hsa-miR-3659 ttaAACACTCttcagagaa
2
UGAGUGUU m7b (m7b->m6b) -0.248000 no TS 13.510000
hsa-miR-4427 ttaaacacTATTCAGAgaa
0 UCUGAAUA m8a Created no TS -0.231000 -3.850000
hsa-miR-4709-3p ttaaacaCTCTTCAgagaa
2
UUGAAGAG m7b Disrupted -0.179000 no TS 8.290000
hsa-miR-5187-3p ttaaacactATTCAGagaa
0 ACUGAAUC m6b Created no TS -0.080000 0.280000
hsa-miR-5585-3p ttaaacaCTATTCAGagaa
0 CUGAAUAG m8a Created no TS -0.148000 -4.100000

Mutation Mutation ID Sample Name Cancer Type
chr14:g.20457665A>G COSN8588396 3402_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3189-3p aagCCCAAGGttttttatt
0 CCCUUGGG m7b (m6b->m7b) no TS -0.269000 -12.170000
hsa-miR-548ac aagcccaaGGTTTTTtatt
0 CAAAAACC m7b Created -0.111000 -0.245000 -4.150000
hsa-miR-548c-3p aagcccaaGATTTTTtatt
0 CAAAAAUC m7b Disrupted -0.067000 no TS 1.170000
hsa-miR-548d-3p aagcccaaGGTTTTTtatt
0 CAAAAACC m7b Created -0.083000 -0.198000 -1.210000
hsa-miR-548h-3p aagcccaaGGTTTTTtatt
0 CAAAAACC m7b Created -0.101000 -0.235000 -3.480000
hsa-miR-548z aagcccaaGGTTTTTtatt
0 CAAAAACC m7b Created -0.101000 -0.235000 -3.480000

Mutation Mutation ID Sample Name Cancer Type
chr14:g.20457694A>T COSN8140352 ASHPC_0009_Pa_P [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table

Location SNP ID Ancestral
Allele
Allele miR ID Conservation miRSite FuncClass Validation context+
score change
20457693 rs1049498 T
A hsa-miR-548ac
hsa-miR-548ae
hsa-miR-548ah-3p
hsa-miR-548aj-3p
hsa-miR-548am-3p
hsa-miR-548aq-3p
hsa-miR-548d-3p
hsa-miR-548h-3p
hsa-miR-548j-3p
hsa-miR-548x-3p
hsa-miR-548z
0 GTTTTTAaaaaaa
GTTTTTAaaaaaa
GTTTTTAaaaaaa
GTTTTTAaaaaaa
GTTTTTAaaaaaa
GTTTTTAaaaaaa
GTTTTTAaaaaaa
GTTTTTAaaaaaa
GTTTTTAaaaaaa
GTTTTTAaaaaaa
GTTTTTAaaaaaa
Created
Created
Created
Created
Created
Created
Created
Created
Created
Created
Created
N
N
N
N
N
N
N
N
N
N
N
-0.018
-0.018
-0.018
-0.018
-0.018
-0.018
-0.021
-0.021
-0.018
-0.018
-0.021

Genome Browser