SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001641 |
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Gene Symbol: | APEX1 |
Description: | Homo sapiens APEX nuclease (multifunctional DNA repair enzyme) 1 (APEX1), transcript variant 4, mRNA. |
Gene Location: | chr14(+):20923289-20925926 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr14:g.20457577C>A | COSN1639515 | RK082_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3659 |
ttaAACACTCttcagagaa |
2 |
UGAGUGUU | m7b | (m7b->m6b) | -0.248000 | no TS |
13.510000 |
|
hsa-miR-4427 |
ttaaacacTATTCAGAgaa |
0 | UCUGAAUA | m8a | Created | no TS | -0.231000 |
-3.850000 |
|
hsa-miR-4709-3p |
ttaaacaCTCTTCAgagaa |
2 |
UUGAAGAG | m7b | Disrupted | -0.179000 | no TS |
8.290000 |
|
hsa-miR-5187-3p |
ttaaacactATTCAGagaa |
0 | ACUGAAUC | m6b | Created | no TS | -0.080000 |
0.280000 |
|
hsa-miR-5585-3p |
ttaaacaCTATTCAGagaa |
0 | CUGAAUAG | m8a | Created | no TS | -0.148000 |
-4.100000 |
|
hsa-miR-3659 |
ttaAACACTCttcagagaa |
2 |
UGAGUGUU | m7b | (m7b->m6b) | -0.248000 | no TS |
13.510000 |
|
hsa-miR-4427 |
ttaaacacTATTCAGAgaa |
0 | UCUGAAUA | m8a | Created | no TS | -0.231000 |
-3.850000 |
|
hsa-miR-4709-3p |
ttaaacaCTCTTCAgagaa |
2 |
UUGAAGAG | m7b | Disrupted | -0.179000 | no TS |
8.290000 |
|
hsa-miR-5187-3p |
ttaaacactATTCAGagaa |
0 | ACUGAAUC | m6b | Created | no TS | -0.080000 |
0.280000 |
|
hsa-miR-5585-3p |
ttaaacaCTATTCAGagaa |
0 | CUGAAUAG | m8a | Created | no TS | -0.148000 |
-4.100000 |
|
hsa-miR-3659 |
ttaAACACTCttcagagaa |
2 |
UGAGUGUU | m7b | (m7b->m6b) | -0.248000 | no TS |
13.510000 |
|
hsa-miR-4427 |
ttaaacacTATTCAGAgaa |
0 | UCUGAAUA | m8a | Created | no TS | -0.231000 |
-3.850000 |
|
hsa-miR-4709-3p |
ttaaacaCTCTTCAgagaa |
2 |
UUGAAGAG | m7b | Disrupted | -0.179000 | no TS |
8.290000 |
|
hsa-miR-5187-3p |
ttaaacactATTCAGagaa |
0 | ACUGAAUC | m6b | Created | no TS | -0.080000 |
0.280000 |
|
hsa-miR-5585-3p |
ttaaacaCTATTCAGagaa |
0 | CUGAAUAG | m8a | Created | no TS | -0.148000 |
-4.100000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr14:g.20457665A>G | COSN8588396 | 3402_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3189-3p |
aagCCCAAGGttttttatt |
0 | CCCUUGGG | m7b | (m6b->m7b) | no TS | -0.269000 |
-12.170000 |
|
hsa-miR-548ac |
aagcccaaGGTTTTTtatt |
0 | CAAAAACC | m7b | Created | -0.111000 | -0.245000 |
-4.150000 |
|
hsa-miR-548c-3p |
aagcccaaGATTTTTtatt |
0 | CAAAAAUC | m7b | Disrupted | -0.067000 | no TS |
1.170000 |
|
hsa-miR-548d-3p |
aagcccaaGGTTTTTtatt |
0 | CAAAAACC | m7b | Created | -0.083000 | -0.198000 |
-1.210000 |
|
hsa-miR-548h-3p |
aagcccaaGGTTTTTtatt |
0 | CAAAAACC | m7b | Created | -0.101000 | -0.235000 |
-3.480000 |
|
hsa-miR-548z |
aagcccaaGGTTTTTtatt |
0 | CAAAAACC | m7b | Created | -0.101000 | -0.235000 |
-3.480000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr14:g.20457694A>T | COSN8140352 | ASHPC_0009_Pa_P | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
20457693 | rs1049498 | T | |||||||
A |
hsa-miR-548ac hsa-miR-548ae hsa-miR-548ah-3p hsa-miR-548aj-3p hsa-miR-548am-3p hsa-miR-548aq-3p hsa-miR-548d-3p hsa-miR-548h-3p hsa-miR-548j-3p hsa-miR-548x-3p hsa-miR-548z |
0 |
GTTTTTAaaaaaa GTTTTTAaaaaaa GTTTTTAaaaaaa GTTTTTAaaaaaa GTTTTTAaaaaaa GTTTTTAaaaaaa GTTTTTAaaaaaa GTTTTTAaaaaaa GTTTTTAaaaaaa GTTTTTAaaaaaa GTTTTTAaaaaaa |
Created Created Created Created Created Created Created Created Created Created Created |
N N N N N N N N N N N |
-0.018 -0.018 -0.018 -0.018 -0.018 -0.018 -0.021 -0.021 -0.018 -0.018 -0.021 |