SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_004306
Gene Symbol: ANXA13
Description: Homo sapiens annexin A13 (ANXA13), transcript variant 2, mRNA.
Gene Location: chr8(-):124693033-124749647
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr8:g.123680839A>C COSN9595360 AOCS-108-1-7 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-105-5p tgtgtgttcCATTTGAaag
6
UCAAAUGC m7a (m6a->m7a) -0.193000 -0.255000 -0.040000
hsa-miR-4694-3p tgtgtgtTCCATTTGaaag
0 CAAAUGGA m8a Created no TS -0.141000 -2.860000

Mutation Mutation ID Sample Name Cancer Type
chr8:g.123681202C>G COSN2259146 RK003_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4484 tggaacCGCCTTTgtcaag
2
AAAAGGCG m7b Disrupted -0.169000 no TS 4.590000
hsa-miR-4484 tggaacCGCCTTTgtcaag
2
AAAAGGCG m7b Disrupted -0.169000 no TS 4.590000
hsa-miR-4484 tggaacCGCCTTTgtcaag
0 AAAAGGCG m7b Disrupted -0.169 no TS 4.59

Mutation Mutation ID Sample Name Cancer Type
chr8:g.123681204G>A COSN168415 GC8_T [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-218-1-3p ggtGGAACCAcctttgtca
0 AUGGUUCC m7b (m6c->m7b) no TS -0.180000 -0.560000
hsa-miR-4484 ggtggaacCGCCTTTgtca
2
AAAAGGCG m7b Disrupted -0.169000 no TS 5.680000
hsa-miR-876-3p ggtggAACCACCtttgtca
0 UGGUGGUU m7b Created no TS -0.185000 -0.100000
hsa-miR-218-1-3p ggtGGAACCAcctttgtca
0 AUGGUUCC m7b (m6c->m7b) no TS -0.180000 -0.560000
hsa-miR-4484 ggtggaacCGCCTTTgtca
2
AAAAGGCG m7b Disrupted -0.169000 no TS 5.680000
hsa-miR-876-3p ggtggAACCACCtttgtca
0 UGGUGGUU m7b Created no TS -0.185000 -0.100000
hsa-miR-218-1-3p ggtGGAACCAcctttgtca
0 AUGGUUCC m7b (m6c->m7b) no TS -0.18 -0.56
hsa-miR-4484 ggtggaacCGCCTTTgtca
0 AAAAGGCG m7b Disrupted -0.169 no TS 5.68
hsa-miR-876-3p ggtggAACCACCtttgtca
0 UGGUGGUU m7b Created no TS -0.185 -0.1

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table

Location SNP ID Ancestral
Allele
Allele miR ID Conservation miRSite FuncClass Validation context+
score change
123681203 rs201780457 C C hsa-miR-4484
2
gaacCGCCTTTgt
Disrupted
N
-0.169
A hsa-miR-6070
1
GAACCGActttgt
Created
N
-0.27
123681204 rs3739283 G G hsa-miR-4484
hsa-miR-6070
2
1
ggaacCGCCTTTg
GGAACCGcctttg
Disrupted
Disrupted
N
N
-0.169
-0.339
A hsa-miR-218-1-3p
hsa-miR-876-3p
1
3
GGAACCAcctttg
ggAACCACCtttg
Created
Created
N
N
-0.18
-0.185

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