SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_004306 |
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Gene Symbol: | ANXA13 |
Description: | Homo sapiens annexin A13 (ANXA13), transcript variant 2, mRNA. |
Gene Location: | chr8(-):124693033-124749647 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.123680839A>C | COSN9595360 | AOCS-108-1-7 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-105-5p |
tgtgtgttcCATTTGAaag |
6 |
UCAAAUGC | m7a | (m6a->m7a) | -0.193000 | -0.255000 |
-0.040000 |
|
hsa-miR-4694-3p |
tgtgtgtTCCATTTGaaag |
0 | CAAAUGGA | m8a | Created | no TS | -0.141000 |
-2.860000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.123681202C>G | COSN2259146 | RK003_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4484 |
tggaacCGCCTTTgtcaag |
2 |
AAAAGGCG | m7b | Disrupted | -0.169000 | no TS |
4.590000 |
|
hsa-miR-4484 |
tggaacCGCCTTTgtcaag |
2 |
AAAAGGCG | m7b | Disrupted | -0.169000 | no TS |
4.590000 |
|
hsa-miR-4484 |
tggaacCGCCTTTgtcaag |
0 | AAAAGGCG | m7b | Disrupted | -0.169 | no TS |
4.59 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.123681204G>A | COSN168415 | GC8_T | [stomach][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-218-1-3p |
ggtGGAACCAcctttgtca |
0 | AUGGUUCC | m7b | (m6c->m7b) | no TS | -0.180000 |
-0.560000 |
hsa-miR-4484 |
ggtggaacCGCCTTTgtca |
2 |
AAAAGGCG | m7b | Disrupted | -0.169000 | no TS |
5.680000 |
hsa-miR-876-3p |
ggtggAACCACCtttgtca |
0 | UGGUGGUU | m7b | Created | no TS | -0.185000 |
-0.100000 |
hsa-miR-218-1-3p |
ggtGGAACCAcctttgtca |
0 | AUGGUUCC | m7b | (m6c->m7b) | no TS | -0.180000 |
-0.560000 |
hsa-miR-4484 |
ggtggaacCGCCTTTgtca |
2 |
AAAAGGCG | m7b | Disrupted | -0.169000 | no TS |
5.680000 |
hsa-miR-876-3p |
ggtggAACCACCtttgtca |
0 | UGGUGGUU | m7b | Created | no TS | -0.185000 |
-0.100000 |
hsa-miR-218-1-3p |
ggtGGAACCAcctttgtca |
0 | AUGGUUCC | m7b | (m6c->m7b) | no TS | -0.18 |
-0.56 |
hsa-miR-4484 |
ggtggaacCGCCTTTgtca |
0 | AAAAGGCG | m7b | Disrupted | -0.169 | no TS |
5.68 |
hsa-miR-876-3p |
ggtggAACCACCtttgtca |
0 | UGGUGGUU | m7b | Created | no TS | -0.185 |
-0.1 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
123681203 | rs201780457 | C | C |
hsa-miR-4484 |
2 |
gaacCGCCTTTgt |
Disrupted |
N |
-0.169 |
A |
hsa-miR-6070 |
1 |
GAACCGActttgt |
Created |
N |
-0.27 |
|||
123681204 | rs3739283 | G | G |
hsa-miR-4484 hsa-miR-6070 |
2 1 |
ggaacCGCCTTTg GGAACCGcctttg |
Disrupted Disrupted |
N N |
-0.169 -0.339 |
A |
hsa-miR-218-1-3p hsa-miR-876-3p |
1 3 |
GGAACCAcctttg ggAACCACCtttg |
Created Created |
N N |
-0.18 -0.185 |