SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001204056 |
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Gene Symbol: | ANKRD12 |
Description: | Homo sapiens ankyrin repeat domain 12 (ANKRD12), transcript variant 2, mRNA. |
Gene Location: | chr18(+):9137560-9285983 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr18:g.9281825A>G | COSN9845659 | C0063T | [kidney][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4742-3p |
aaacttttaAATACAGcat |
2 |
UCUGUAUU | m7b | (m7b->m6c) | -0.091000 | no TS |
0.010000 |
|
hsa-miR-4799-5p |
aaactTTTAGATacagcat |
1 |
AUCUAAAU | m7a | Created | 0.250000 | 0.250000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr18:g.9283178G>T | COSN15535809 | AOCS-064-1-6 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-146a-3p |
agaaaaTCAGAGaggggta |
3 |
CCUCUGAA | m6b | Disrupted | 0.034000 | no TS |
1.990000 |
|
hsa-miR-29a-5p |
agaAAATCAGagaggggta |
1 |
ACUGAUUU | m7b | (m7b->m6b) | 0.178000 | 0.043000 |
0.490000 |
|
hsa-miR-301a-5p |
agaaaaTCAGAGaggggta |
3 |
GCUCUGAC | m6b | Disrupted | 0.029000 | no TS |
0.030000 |
|
hsa-miR-3183 |
agaaaatcAGAGAGGggta |
3 |
GCCUCUCU | m7b | Disrupted | -0.002000 | no TS |
2.610000 |
|
hsa-miR-3920 |
agaaAATCAGagaggggta |
0 | ACUGAUUA | m6b | Disrupted | 0.048000 | -0.014000 |
0.130000 |
|
hsa-miR-4723-3p |
agaaaatcAGAGAGGGgta |
3 |
CCCUCUCU | m8a | Disrupted | -0.002000 | no TS |
0.070000 |
|
hsa-miR-146a-3p |
agaaaaTCAGAGaggggta |
3 |
CCUCUGAA | m6b | Disrupted | 0.034000 | no TS |
1.990000 |
|
hsa-miR-29a-5p |
agaAAATCAGagaggggta |
1 |
ACUGAUUU | m7b | (m7b->m6b) | 0.178000 | 0.043000 |
0.490000 |
|
hsa-miR-301a-5p |
agaaaaTCAGAGaggggta |
3 |
GCUCUGAC | m6b | Disrupted | 0.029000 | no TS |
0.030000 |
|
hsa-miR-3183 |
agaaaatcAGAGAGGggta |
3 |
GCCUCUCU | m7b | Disrupted | -0.002000 | no TS |
2.610000 |
|
hsa-miR-3920 |
agaaAATCAGagaggggta |
0 | ACUGAUUA | m6b | Disrupted | 0.048000 | -0.014000 |
0.130000 |
|
hsa-miR-4723-3p |
agaaaatcAGAGAGGGgta |
3 |
CCCUCUCU | m8a | Disrupted | -0.002000 | no TS |
0.070000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr18:g.9283544T>A | COSN5183496 | PD4109a | [breast][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr18:g.9283692C>T | COSN5183497 | PD4005a | [breast][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4773 |
caattTGTTCTaaatatct |
16 |
CAGAACAG | m6b | Disrupted | 0.024000 | no TS |
0.040000 |
|
hsa-miR-5687 |
caatttGTTCTAAatatct |
16 |
UUAGAACG | m7a | Disrupted | -0.009000 | no TS |
1.500000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr18:g.9283696A>G | COSN1759902 | RK046_C02 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3145-3p |
ttgttctAAATATCTgttt |
0 | AGAUAUUU | m8a | Disrupted | 0.263000 | 0.191000 |
0.010000 |
|
hsa-miR-374c-3p |
ttgttCTAAGTatctgttt |
0 | CACUUAGC | m6b | Created | -0.074000 | -0.069000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr18:g.9283696A>T | COSN9845660 | C0089T | [kidney][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3145-3p |
ttgttctAAATATCTgttt |
0 | AGAUAUUU | m8a | Disrupted | 0.263000 | 0.191000 |
-0.080000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr18:g.9283696A>G | ICGC_sm173842 | RK046_C02 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3145-3p |
ttgttctAAATATCTgttt |
0 | AGAUAUUU | m8a | Disrupted | 0.263 | 0.191 |
-0.43 |
|
hsa-miR-374c-3p |
ttgttCTAAGTatctgttt |
0 | CACUUAGC | m6b | Created | -0.074 | -0.069 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr18:g.9283849A>C | COSN1210289 | HX12T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
9282697 | rs186459932 | G | |||||||
C |
hsa-miR-3145-3p hsa-miR-4330 |
8 12 |
AAATATCtgagga aaatATCTGAGga |
Created Created |
N N |
0.162 -0.019 |
|||
9283177 | rs148576201 | - | AG |
hsa-miR-146a-3p hsa-miR-29a-5p hsa-miR-301a-5p hsa-miR-3183 hsa-miR-3920 hsa-miR-3921 hsa-miR-4653-5p hsa-miR-4723-3p hsa-miR-6769b-3p hsa-miR-6817-3p |
3 3 3 3 3 3 3 3 3 3 |
gaaaaTCAGAGAggg gaAAATCAGAgaggg gaaaaTCAGAGAggg gaaaatcAGAGAGGg gaaAATCAGAgaggg gaaaaTCAGAGAggg gaaaaTCAGAGAggg gaaaatcAGAGAGGg gaaaatcAGAGAGGg gaaaatCAGAGAGgg |
Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown |
N N N N N N N N N N |
0.034 -0.006 0.029 -0.002 -0.003 0.032 0.036 -0.002 0.007 -0.02 |
- |
hsa-miR-2276-5p |
3 |
gaaaatCAGAGGG |
Unknown |
N |
-0.108 |
|||
9283699 | rs76177498 | T | T |
hsa-miR-3145-3p |
2 |
tAAATATCtgttt |
Disrupted |
N |
0.072 |
C |
hsa-miR-4678 |
2 |
taAATACCTgttt |
Created |
N |
-0.031 |
|||
9284604 | rs7228251 | T | T |
hsa-miR-3145-3p |
5 |
aAAATATCttgta |
Disrupted |
N |
0.06 |
C |
hsa-miR-4678 hsa-miR-624-3p |
5 4 |
aaAATACCTtgta aaaatACCTTGTA |
Created Created |
N N |
-0.047 -0.109 |