SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_000028 |
---|---|
Gene Symbol: | AGL |
Description: | Homo sapiens amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase (AGL), transcript variant 4, mRNA. |
Gene Location: | chr1(+):100316044-100389579 |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.99921661G>T | cosmic_v64_1651109 | Colorectal | ||||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1277-5p |
tttattacATATATTaagt |
0 | AAAUAUAU | m7b | Created | 0.141 | 0.235 | No effect |
hsa-miR-2054 |
ttTATTACAGatattaagt |
0 | CUGUAAUA | m8a | (m8a->m7a) | 0 | 0 |
-0.07 |
hsa-miR-3607-3p |
tttaTTACAGatattaagt |
2 |
ACUGUAAA | m6b | Disrupted | 0.052 | 0.026 | No effect |
hsa-miR-3686 |
tttaTTACAGATattaagt |
2 |
AUCUGUAA | m8a | Disrupted | -0.349 | -0.226 | No effect |
hsa-miR-380-3p |
tttATTACATAtattaagt |
0 | UAUGUAAU | m8a | Created | 0.084 | 0.168 | No effect |
hsa-miR-3924 |
tttatTACATATattaagt |
0 | AUAUGUAU | m7a | Created | -0.106 | -0.106 | No effect |
hsa-miR-4495 |
tttaTTACATatattaagt |
0 | AAUGUAAA | m6b | Created | 0.099 | 0.195 | No effect |
hsa-miR-889 |
tttattacaGATATTAAgt |
0 | UUAAUAUC | m8a | (m8a->m7b) | 0 | 0 | No effect |
hsa-miR-1277-5p |
tttattacATATATTaagt |
0 | AAAUAUAU | m7b | Created | 0.141000 | 0.235000 | No effect |
hsa-miR-2054 |
ttTATTACAGatattaagt |
0 | CUGUAAUA | m8a | (m8a->m7a) | 0.000000 | 0.000000 |
-0.070000 |
hsa-miR-3607-3p |
tttaTTACAGatattaagt |
2 |
ACUGUAAA | m6b | Disrupted | 0.052000 | 0.026000 | No effect |
hsa-miR-3686 |
tttaTTACAGATattaagt |
2 |
AUCUGUAA | m8a | Disrupted | -0.349000 | -0.226000 | No effect |
hsa-miR-380-3p |
tttATTACATAtattaagt |
0 | UAUGUAAU | m8a | Created | 0.084000 | 0.168000 | No effect |
hsa-miR-3924 |
tttatTACATATattaagt |
5 |
AUAUGUAU | m7a | Created | -0.106000 | -0.106000 | No effect |
hsa-miR-4495 |
tttaTTACATatattaagt |
0 | AAUGUAAA | m6b | Created | 0.099000 | 0.195000 | No effect |
hsa-miR-889 |
tttattacaGATATTAAgt |
2 |
UUAAUAUC | m8a | (m8a->m7b) | 0.000000 | 0.000000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.99921714A>G | COSN8882346 | AOCS-093-3-6 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-124-3p |
catatgtaaGTGCCTTAta |
3 |
UAAGGCAC | m8a | (m7b->m8a) | -0.233000 | -0.528000 |
-1.750000 |
hsa-miR-3910 |
catatgtaaATGCCTTata |
3 |
AAAGGCAU | m7b | (m7b->m6c) | -0.740000 | -0.509000 |
0.090000 |
hsa-miR-506-3p |
catatgtaaGTGCCTTAta |
3 |
UAAGGCAC | m8a | (m7b->m8a) | -0.234000 | -0.535000 |
-0.060000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.99921923G>T | COSN6499463 | CHC205T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.99922679C>T | COSN6499464 | CHC205T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4495 |
taacaTTTACATgagttaa |
0 | AAUGUAAA | m7b | Disrupted | 0.099000 | 0.096000 |
0.450000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.99922947A>C | COSN6499465 | CHC205T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-2054 |
aagaaATTACAGaagaaaa |
0 | CUGUAAUA | m7a | Created | 0.000000 | 0.000000 |
-0.140000 |
hsa-miR-302b-5p |
aagaaaTTAAAGaagaaaa |
0 | ACUUUAAC | m6b | Disrupted | 0.124000 | 0.042000 |
0.020000 |
hsa-miR-302d-5p |
aagaaaTTAAAGaagaaaa |
0 | ACUUUAAC | m6b | Disrupted | 0.131000 | 0.042000 |
0.070000 |
hsa-miR-3182 |
aagaaattACAGAAGaaaa |
0 | GCUUCUGU | m7b | Created | no TS | -0.148000 |
-6.360000 |
hsa-miR-3607-3p |
aagaaaTTACAGaagaaaa |
2 |
ACUGUAAA | m6b | Created | 0.052000 | 0.056000 |
-6.640000 |
hsa-miR-3686 |
aagaaaTTACAGAagaaaa |
2 |
AUCUGUAA | m7b | Created | -0.349000 | -0.411000 |
-0.030000 |
hsa-miR-4775 |
aagAAATTAAagaagaaaa |
2 |
UUAAUUUU | m7a | (m7a->m6a) | 0.270000 | 0.119000 |
0.030000 |
hsa-miR-4778-3p |
aagaaattaAAGAAGAaaa |
1 |
UCUUCUUC | m7a | (m7a->m6b) | 0.026000 | no TS |
0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.99923192T>C | COSN6499466 | CHC205T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.99923795C>T | COSN1395087 | RK209_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4775 |
aatcAAAATTAAaattact |
2 |
UUAAUUUU | m8a | Created | 0.270000 | 0.207000 | No effect |
hsa-miR-590-3p |
aatcaaaatTAAAATTAct |
2 |
UAAUUUUA | m8a | (m7b->m8a) | 0.319000 | 0.277000 |
-0.020000 |