SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_000025 |
---|---|
Gene Symbol: | ADRB3 |
Description: | Homo sapiens adrenergic, beta-3-, receptor (ADRB3), mRNA. |
Gene Location: | chr8(-):37820513-37824184 |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.37963044C>T | COSN2275009 | RK177_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-2110 |
caccTTCCCCAgctacaaa |
2 |
UUGGGGAA | m7b | Disrupted | -0.131000 | no TS |
0.720000 |
|
hsa-miR-4271 |
cacCTTCCCCagctacaaa |
2 |
GGGGGAAG | m7b | (m7b->m6c) | -0.402000 | no TS |
0.920000 |
|
hsa-miR-4667-5p |
cacctTCCCCAGctacaaa |
2 |
ACUGGGGA | m7b | Disrupted | -0.246000 | no TS |
2.080000 |
|
hsa-miR-4700-5p |
cacctTCCCCAGctacaaa |
2 |
UCUGGGGA | m7b | Disrupted | -0.256000 | no TS |
2.180000 |
|
hsa-miR-4725-3p |
cacCTTCCCCAgctacaaa |
2 |
UGGGGAAG | m8a | Disrupted | -0.392000 | no TS |
2.090000 |
|
hsa-miR-4731-5p |
caccttCCCCAGCtacaaa |
0 | UGCUGGGG | m7b | Disrupted | -0.622000 | -0.278000 |
2.180000 |
|
hsa-miR-4747-5p |
caCCTTCCCTagctacaaa |
2 |
AGGGAAGG | m8a | (m7b->m8a) | -0.793000 | -0.825000 |
-0.420000 |
|
hsa-miR-5196-5p |
caCCTTCCCTagctacaaa |
2 |
AGGGAAGG | m8a | (m7b->m8a) | -0.786000 | -0.818000 |
-0.120000 |
|
hsa-miR-5584-5p |
caccTTCCCTagctacaaa |
1 |
CAGGGAAA | m6b | Created | 0.019000 | -0.089000 |
-3.670000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.37963181T>C | COSN7671605 | ASHPC_0016_Pa_P | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3939 |
gtgtgtgTGCGCGTgtgtg |
0 | UACGCGCA | m7b | Created | no TS | -0.340000 |
1.810000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.37963640T>C | COSN8518882 | J10_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-578 |
cagggttcACAAGAAGgtg |
0 | CUUCUUGU | m8a | Created | 0.000000 | 0.000000 |
-0.220000 |
|
hsa-miR-581 |
cagggttCACAAGAaggtg |
0 | UCUUGUGU | m7a | Created | no TS | -0.039000 |
-0.140000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.37963669C>T | COSN4939897 | PD4109a | [breast][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-221-5p |
gaaggacttTGCCAGGgtt |
0 | ACCUGGCA | m7b | (m6b->m7b) | no TS | -0.162000 |
-1.020000 |
|
hsa-miR-3128 |
gaaggactTTGCCAGggtt |
0 | UCUGGCAA | m7b | Created | no TS | -0.090000 |
-4.890000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.37963782C>T | COSN8518883 | 2173_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.37963787C>- | ICGC_519943 | TCGA-F4-6703-01A-11D-1835-10 | ColonAdenocarcinoma(TCGA,US) | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr8:g.37964016C>G | COSN8315150 | TCGA-AC-A3W6-01 | [breast][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-299-5p |
agatgttttGTAAACCcca |
0 | UGGUUUAC | m7b | (m6b->m7b) | no TS | -0.152000 | No effect | |
hsa-miR-520d-5p |
agatgtTTTGTAaacccca |
0 | CUACAAAG | m6b | Created | no TS | 0.048000 |
-0.480000 |
|
hsa-miR-524-5p |
agatgtTTTGTAaacccca |
0 | CUACAAAG | m6b | Created | no TS | 0.045000 | No effect | |
hsa-miR-570-3p |
agaTGTTTTCtaaacccca |
0 | CGAAAACA | m7b | (m7b->m6c) | -0.052000 | 0.011000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.37964094G>A | ICGC_500238 | TCGA-G4-6588-01A-11D-1771-10 | ColonAdenocarcinoma(TCGA,US) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1291 |
cctgacgaCAGGGCCAtgt |
0 | UGGCCCUG | m8a | Created | no TS | -0.463 |
-0.05 |
hsa-miR-146b-3p |
cctgacgACAGGGCcatgt |
0 | UGCCCUGU | m7b | Created | no TS | -0.211 |
-0.44 |
hsa-miR-328 |
cctgacgacAGGGCCAtgt |
0 | CUGGCCCU | m7b | (m6b->m7b) | no TS | -0.195 | No effect |
hsa-miR-339-5p |
cctgacGACAGGGccatgt |
0 | UCCCUGUC | m7b | Created | no TS | -0.186 |
-0.11 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
37963044 | rs201274361 | C | C |
hsa-miR-2110 hsa-miR-4271 hsa-miR-4667-5p hsa-miR-4700-5p hsa-miR-4725-3p hsa-miR-4731-5p hsa-miR-6780b-5p hsa-miR-8089 |
2 2 2 2 2 2 2 2 |
cTTCCCCAgctac CTTCCCCAgctac ctTCCCCAGctac ctTCCCCAGctac CTTCCCCAgctac cttCCCCAGCtac CTTCCCCAgctac ctTCCCCAGctac |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N N |
-0.131 -0.402 -0.246 -0.256 -0.392 -0.344 -0.381 -0.246 |
A |
hsa-miR-4453 hsa-miR-450a-1-3p hsa-miR-4538 hsa-miR-4747-5p hsa-miR-5196-5p |
2 2 2 2 2 |
cttcCCAAGCTAc cTTCCCAAgctac cttcCCAAGCTAc CTTCCCAagctac CTTCCCAagctac |
Created Created Created Created Created |
N N N N N |
-0.4 -0.096 -0.411 -0.204 -0.203 |
|||
37963047 | rs199791905 | C | C |
hsa-miR-2110 hsa-miR-4271 hsa-miR-4667-5p hsa-miR-4700-5p hsa-miR-4725-3p hsa-miR-4731-5p hsa-miR-4747-5p hsa-miR-5196-5p hsa-miR-6780b-5p hsa-miR-8089 |
2 2 2 2 2 2 2 2 2 2 |
caccTTCCCCAgc cacCTTCCCCAgc cacctTCCCCAGc cacctTCCCCAGc cacCTTCCCCAgc caccttCCCCAGC caCCTTCCCcagc caCCTTCCCcagc cacCTTCCCCAgc cacctTCCCCAGc |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N N N N |
-0.131 -0.402 -0.246 -0.256 -0.392 -0.344 -0.22 -0.211 -0.381 -0.246 |
T |
hsa-miR-204-3p hsa-miR-3153 hsa-miR-4646-5p hsa-miR-4668-5p hsa-miR-6730-5p hsa-miR-6733-5p hsa-miR-6739-5p |
2 2 2 2 1 2 2 |
cacctTTCCCAGc cacCTTTCCCAgc cacctTTCCCAGc caccTTTCCCAgc cACCTTTCccagc cacCTTTCCCAgc cacCTTTCCCAgc |
Created Created Created Created Created Created Created |
N N N N N N N |
-0.217 -0.293 -0.208 -0.074 -0.115 -0.251 -0.283 |
|||
37963063 | rs200661120 | C | C |
hsa-miR-3927-3p hsa-miR-4451 hsa-miR-4747-5p hsa-miR-5196-5p hsa-miR-6831-5p |
7 6 7 7 7 |
ccTCTACCTtccc cCTCTACCttccc cctctaCCTTCCC cctctaCCTTCCC ccTCTACCTtccc |
Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N |
-0.141 -0.211 -0.283 -0.297 -0.141 |
T |
hsa-miR-4662a-3p |
7 |
cctCTATCTTccc |
Created |
N |
-0.096 |
|||
37963177 | rs201029362 | - | |||||||
C |
hsa-miR-3939 |
0 |
tgTGCGCGTgtgt |
Unknown |
N |
-0.339 |
|||
37963181 | rs199958013 | T | |||||||
C |
hsa-miR-3939 |
0 |
tgtgTGCGCGTgt |
Created |
N |
-0.34 |
|||
37963536 | rs199764189 | T | T |
hsa-miR-495-3p hsa-miR-5688 hsa-miR-570-3p |
4 4 9 |
cGTTTGTTttctt cGTTTGTTttctt cgttTGTTTTCtt |
Disrupted Disrupted Disrupted |
N N N |
0.055 0.027 -0.016 |
37963537 | rs200723701 | G | G |
hsa-miR-495-3p hsa-miR-5688 hsa-miR-570-3p |
4 4 12 |
ccGTTTGTTttct ccGTTTGTTttct ccgttTGTTTTCt |
Disrupted Disrupted Disrupted |
N N N |
0.055 0.027 -0.016 |
37964051 | rs201210193 | C | C |
hsa-miR-570-3p |
5 |
gGTTTTCAccatc |
Disrupted |
N |
0.029 |
T |
hsa-miR-548ac hsa-miR-548ae hsa-miR-548ah-3p hsa-miR-548aj-3p hsa-miR-548am-3p hsa-miR-548aq-3p hsa-miR-548d-3p hsa-miR-548h-3p hsa-miR-548j-3p hsa-miR-548x-3p hsa-miR-548z |
4 5 5 5 5 5 4 4 5 5 4 |
GGTTTTTAccatc gGTTTTTAccatc gGTTTTTAccatc gGTTTTTAccatc gGTTTTTAccatc gGTTTTTAccatc GGTTTTTAccatc GGTTTTTAccatc gGTTTTTAccatc gGTTTTTAccatc GGTTTTTAccatc |
Created Created Created Created Created Created Created Created Created Created Created |
N N N N N N N N N N N |
-0.049 0.079 0.079 0.079 0.079 0.079 -0.049 -0.049 0.076 0.079 -0.049 |