SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_000020
Gene Symbol: ACVRL1
Description: Homo sapiens activin A receptor type II-like 1 (ACVRL1), transcript variant 1, mRNA.
Gene Location: chr12(+):52301201-52317145

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr12:g.51921192G>C COSN15433137 AOCS-150-8-X [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3136-5p gaggctccaCAGTCAGagt
0 CUGACUGA m7a (m6b->m7a) NA NA No effect
hsa-miR-345-5p gaggctccaGAGTCAGagt
0 GCUGACUC m7b (m7b->m6c) -0.265000 -0.065000 No effect
hsa-miR-4318 gaggctCCACAGTcagagt
0 CACUGUGG m7b Created no TS -0.128000 -0.790000
hsa-miR-4522 gaggctcCAGAGTCAgagt
0 UGACUCUG m8a Disrupted -0.211000 no TS 0.500000
hsa-miR-514a-5p gaggctCCAGAGTcagagt
1
UACUCUGG m7b Disrupted -0.305000 -0.182000 0.590000
hsa-miR-516b-5p gaggCTCCAGAgtcagagt
2
AUCUGGAG m7b Disrupted -0.158000 -0.071000 0.010000
hsa-miR-518c-5p gaggcTCCAGAGtcagagt
2
UCUCUGGA m7b Disrupted -0.242000 -0.159000 No effect
hsa-miR-943 gaggctccACAGTCAGagt
0 CUGACUGU m8a Created no TS -0.083000 No effect
hsa-miR-3136-5p gaggctccaCAGTCAGagt
0 CUGACUGA m7a (m6b->m7a) NA NA No effect
hsa-miR-345-5p gaggctccaGAGTCAGagt
0 GCUGACUC m7b (m7b->m6c) -0.265000 -0.065000 No effect
hsa-miR-4318 gaggctCCACAGTcagagt
0 CACUGUGG m7b Created no TS -0.128000 -0.790000
hsa-miR-4522 gaggctcCAGAGTCAgagt
0 UGACUCUG m8a Disrupted -0.211000 no TS 0.500000
hsa-miR-514a-5p gaggctCCAGAGTcagagt
1
UACUCUGG m7b Disrupted -0.305000 -0.182000 0.590000
hsa-miR-516b-5p gaggCTCCAGAgtcagagt
2
AUCUGGAG m7b Disrupted -0.158000 -0.071000 0.010000
hsa-miR-518c-5p gaggcTCCAGAGtcagagt
2
UCUCUGGA m7b Disrupted -0.242000 -0.159000 No effect
hsa-miR-943 gaggctccACAGTCAGagt
0 CUGACUGU m8a Created no TS -0.083000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr12:g.51921248C>A COSN9563139 AOCS-139-12-5 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-106a-5p gggcctGCACTTTgccccc
7
AAAAGUGC m7b Disrupted 0.017000 -0.017000 No effect
hsa-miR-106b-5p gggcctGCACTTTgccccc
7
UAAAGUGC m7b Disrupted 0.017000 -0.017000 No effect
hsa-miR-17-5p gggcctGCACTTTGccccc
7
CAAAGUGC m8a Disrupted 0.017000 -0.017000 No effect
hsa-miR-20a-5p gggcctGCACTTTgccccc
7
UAAAGUGC m7b Disrupted 0.017000 -0.017000 No effect
hsa-miR-20b-5p gggcctGCACTTTGccccc
7
CAAAGUGC m8a Disrupted 0.017000 -0.017000 No effect
hsa-miR-519a-3p gggccTGCACTTTgccccc
6
AAAGUGCA m8a Disrupted 0.028000 no TS 0.830000
hsa-miR-519b-3p gggccTGCACTTTgccccc
6
AAAGUGCA m8a Disrupted 0.028000 no TS 0.110000
hsa-miR-519c-3p gggccTGCACTTTgccccc
6
AAAGUGCA m8a Disrupted 0.028000 no TS No effect
hsa-miR-519d gggcctGCACTTTGccccc
7
CAAAGUGC m8a Disrupted 0.017000 -0.008000 No effect
hsa-miR-520g gggcctgCACTTTGccccc
1
ACAAAGUG m7b Disrupted 0.066000 no TS No effect
hsa-miR-520h gggcctgCACTTTGccccc
1
ACAAAGUG m7b Disrupted 0.066000 no TS 0.010000
hsa-miR-526b-3p gggcctGCACTTTgccccc
7
GAAAGUGC m7b Disrupted 0.035000 -0.008000 No effect
hsa-miR-93-5p gggcctGCACTTTGccccc
7
CAAAGUGC m8a Disrupted 0.008000 -0.017000 0.010000

Mutation Mutation ID Sample Name Cancer Type
chr12:g.51921320C>T COSN5323901 RK298_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-185-3p ctgtcCAGCCCCTggcaca
1
AGGGGCUG m8a Disrupted -0.546000 -0.421000 No effect
hsa-miR-28-5p ctgtccAGCTCCTggcaca
0 AAGGAGCU m7b Created no TS -0.056000 No effect
hsa-miR-3139 ctgtccAGCTCCTggcaca
0 UAGGAGCU m7b Created no TS -0.065000 -0.020000
hsa-miR-3652 ctgTCCAGCCcctggcaca
7
CGGCUGGA m7b (m7b->m6b) -0.206000 -0.174000 No effect
hsa-miR-4430 ctgTCCAGCCcctggcaca
7
AGGCUGGA m7b (m7b->m6b) -0.215000 -0.165000 No effect
hsa-miR-4487 ctgtCCAGCTCctggcaca
0 AGAGCUGG m7b Created -0.159000 -0.313000 No effect
hsa-miR-4492 ctgtCCAGCCCCtggcaca
2
GGGGCUGG m8a Disrupted -0.891000 -0.743000 0.010000
hsa-miR-4498 ctgtCCAGCCCctggcaca
2
UGGGCUGG m7b Disrupted -1.027000 -0.851000 -0.240000
hsa-miR-5001-5p ctgtCCAGCCCctggcaca
2
AGGGCUGG m7b Disrupted -0.938000 -0.790000 No effect
hsa-miR-665 ctgtccagCTCCTGGcaca
0 ACCAGGAG m7b Created no TS -0.094000 -0.390000
hsa-miR-708-5p ctgtccAGCTCCTggcaca
0 AAGGAGCU m7b Created no TS -0.037000 -0.400000
hsa-miR-762 ctgtCCAGCCCCtggcaca
2
GGGGCUGG m8a Disrupted -1.028000 -0.852000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr12:g.51921773T>C ICGC_DEACD824-2A78-11E2-B303-24FD496BB9B8 CPCG_0103_Pr_P_P6 ProstateCancer(OICR,CA)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1254 ctcttgttgTCCAGGCTag
0 AGCCUGGA m8a (m8a->m7b) -0.143 no TS 1.13
hsa-miR-1285-3p ctcttgtTGCCCAGgctag
0 UCUGGGCA m7b Created -0.052 -0.16 -1.19
hsa-miR-196a-3p ctctTGTTGCCcaggctag
0 CGGCAACA m7b Created no TS -0.097 -1.33
hsa-miR-3116 ctcttgttgTCCAGGCtag
0 UGCCUGGA m7b (m7b->m6c) -0.115 no TS 1.49
hsa-miR-3187-5p ctcttgtTGCCCAGGctag
0 CCUGGGCA m8a Created -0.052 -0.141 No effect
hsa-miR-3529-3p ctcTTGTTGTccaggctag
1
AACAACAA m7b (m7b->m6b) 0.076 no TS -1.3
hsa-miR-3690 ctcttgttGTCCAGGctag
0 ACCUGGAC m7b Disrupted -0.139 no TS 2.26
hsa-miR-4638-3p ctcttgtTGTCCAGGctag
1
CCUGGACA m8a Disrupted -0.097 -0.002 0.01
hsa-miR-5189 ctcttgtTGCCCAGgctag
0 UCUGGGCA m7b Created -0.052 -0.15 -0.02
hsa-miR-612 ctcttgtTGCCCAGgctag
0 GCUGGGCA m7b Created -0.049 -0.138 No effect
hsa-miR-661 ctcttgttgCCCAGGCtag
0 UGCCUGGG m7b (m6c->m7b) -0.108 -0.235 No effect

Mutation Mutation ID Sample Name Cancer Type
chr12:g.51922003G>A ICGC_8630A43C-2A78-11E2-96E7-04FD496BB9B8 CPCG_0102_Pr_P_P1 ProstateCancer(OICR,CA)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4733-5p agtgcTGGGATTacaggtg
0 AAUCCCAA m7a Created NA NA -7.26

Mutation Mutation ID Sample Name Cancer Type
chr12:g.51922853T>G COSN5945991 RK193_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-106a-5p ggtgGCACTTTTctaggcc
7
AAAAGUGC m8a Disrupted 0.017000 0.034000 -0.360000
hsa-miR-106b-5p ggtgGCACTTTtctaggcc
7
UAAAGUGC m7b Disrupted 0.017000 0.034000 -3.550000
hsa-miR-17-5p ggtgGCACTTTtctaggcc
7
CAAAGUGC m7b Disrupted 0.017000 0.034000 -0.360000
hsa-miR-20a-5p ggtgGCACTTTtctaggcc
7
UAAAGUGC m7b Disrupted 0.017000 0.034000 -0.690000
hsa-miR-20b-5p ggtgGCACTTTtctaggcc
7
CAAAGUGC m7b Disrupted 0.017000 0.034000 -0.410000
hsa-miR-4773 ggtggcaCTGTTCTaggcc
0 CAGAACAG m7b Created no TS -0.091000 No effect
hsa-miR-519d ggtgGCACTTTtctaggcc
7
CAAAGUGC m7b Disrupted 0.017000 0.025000 No effect
hsa-miR-526b-3p ggtgGCACTTTtctaggcc
7
GAAAGUGC m7b Disrupted 0.035000 0.043000 No effect
hsa-miR-548t-5p ggtggCACTTTTctaggcc
2
CAAAAGUG m7b Disrupted 0.075000 no TS 0.020000
hsa-miR-93-5p ggtgGCACTTTtctaggcc
7
CAAAGUGC m7b Disrupted 0.008000 0.025000 -0.270000

Mutation Mutation ID Sample Name Cancer Type
chr12:g.51923209G>A COSN1576055 RK167_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-222-5p ggtggcgtTACTGAGagca
2
CUCAGUAG m7a Created -0.026000 -0.026000 -1.100000
hsa-miR-4264 ggtggcgttACTGAGagca
4
ACUCAGUC m6b Created -0.039000 -0.110000 0.140000
hsa-miR-4797-3p ggtggcgtTACTGAGAgca
4
UCUCAGUA m8a Created -0.051000 -0.306000 -0.020000
hsa-miR-802 ggtggcGTTACTGagagca
0 CAGUAACA m7a Created NA NA -14.100000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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