SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_000016
Gene Symbol: ACADM
Description: Homo sapiens acyl-CoA dehydrogenase, C-4 to C-12 straight chain (ACADM), nuclear gene encoding mitochondrial protein, transcript variant 1, mRNA.
Gene Location: chr1(+):76190042-76229355
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.75763548A>G COSN1457278 RK003_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-329 taataGTGTGTatttcttg
 0 AACACACC m6b Created no TS -0.160000 -2.630000
hsa-miR-362-3p taataGTGTGTatttcttg
 0 AACACACC m6b Created no TS -0.160000 -4.380000
hsa-miR-3941 taataGTGTGTAtttcttg
 0 UUACACAC m7b Created no TS -0.237000 -5.660000
hsa-miR-4789-5p taataGTGTATAtttcttg
 3
 GUAUACAC m7b Disrupted -0.206000 no TS 0.220000
hsa-miR-603 taatAGTGTGTatttcttg
 0 CACACACU m7b Created no TS -0.436000 -4.780000
hsa-miR-329 taataGTGTGTatttcttg
 0 AACACACC m6b Created no TS -0.160000 -2.630000
hsa-miR-362-3p taataGTGTGTatttcttg
 0 AACACACC m6b Created no TS -0.160000 -4.380000
hsa-miR-3941 taataGTGTGTAtttcttg
 0 UUACACAC m7b Created no TS -0.237000 -5.660000
hsa-miR-4789-5p taataGTGTATAtttcttg
 3
 GUAUACAC m7b Disrupted -0.206000 no TS 0.220000
hsa-miR-603 taatAGTGTGTatttcttg
 0 CACACACU m7b Created no TS -0.436000 -4.780000
hsa-miR-329 taataGTGTGTatttcttg
 0 AACACACC m6b Created no TS -0.16 -2.63
hsa-miR-362-3p taataGTGTGTatttcttg
 0 AACACACC m6b Created no TS -0.16 -4.38
hsa-miR-3941 taataGTGTGTAtttcttg
 0 UUACACAC m7b Created no TS -0.237 -5.66
hsa-miR-4789-5p taataGTGTATAtttcttg
 3
 GUAUACAC m7b Disrupted -0.206 no TS 0.22
hsa-miR-603 taatAGTGTGTatttcttg
 0 CACACACU m7b Created no TS -0.436 -4.78

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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