SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_000927 |
---|---|
Gene Symbol: | ABCB1 |
Description: | Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 1 (ABCB1), mRNA. |
Gene Location: | chr7(-):87133178-87342639 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.87503884A>C | COSN15377497 | 0091_CRUK_PC_0091_T1_DNA | [prostate][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4795-3p |
gtgtctATAATAaaactaa |
7 |
AUAUUAUU | m6b | Disrupted | -0.014000 | no TS |
2.510000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr7:g.87503969T>C | COSN8806315 | SS6003314 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-2110 |
tttatatTTCCCCAtttgg |
0 | UUGGGGAA | m7b | Created | no TS | -0.257000 |
-1.750000 |
hsa-miR-3153 |
tttataTTTCCCCatttgg |
0 | GGGGAAAG | m7a | Created | -0.134000 | no TS |
1.440000 |
hsa-miR-4271 |
tttatatTTCCCCatttgg |
0 | GGGGGAAG | m6b | Created | no TS | -0.186000 |
-2.920000 |
hsa-miR-4668-5p |
tttataTTTTCCCatttgg |
0 | AGGGAAAA | m7b | Disrupted | -0.346000 | no TS |
3.120000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
87503886 | rs200185314 | T | T |
hsa-miR-4795-3p |
21 |
tgtctATAATAAa |
Disrupted |
N |
-0.014 |
C |
hsa-miR-3674 hsa-miR-5701 |
3 21 |
tgTCTACAAtaaa tgtctACAATAAa |
Created Created |
N N |
-0.188 -0.071 |
|||
87503887 | rs201306530 | A | A |
hsa-miR-4795-3p |
21 |
gtgtctATAATAA |
Disrupted |
N |
-0.014 |
G |
hsa-miR-556-3p hsa-miR-6504-3p |
21 10 |
gtgtctGTAATAA gtgtCTGTAATAa |
Created Created |
N N |
-0.067 -0.257 |