| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_173076 |
|---|---|
| Gene Symbol: | ABCA12 |
| Description: | Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 12 (ABCA12), transcript variant 2, mRNA. |
| Gene Location: | chr2(-):215796265-216003151 |
| Browse Associations | |
| Browse Pathways | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr2:g.214931561T>C | COSN8766105 | SS6003149 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3940-5p |
ccaataAACCCAaagttta |
0 | GUGGGUUG | m6b | Created | no TS | -0.183000 |
-11.810000 |
| hsa-miR-4507 |
ccaataAACCCAaagttta |
0 | CUGGGUUG | m6b | Created | no TS | -0.186000 |
-10.760000 |
| hsa-miR-629-5p |
ccaaTAAACCCAaagttta |
0 | UGGGUUUA | m8a | Created | no TS | -0.418000 |
-1.520000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr2:g.214932008C>A | COSN7797868 | PCSI_0002_Pa_P | [pancreas][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3157-3p |
tagagAGGGCAatttaccc |
2 |
CUGCCCUA | m6b | Disrupted | -0.176000 | no TS |
0.100000 |
| hsa-miR-4290 |
tagaGAGGGCAatttaccc |
4 |
UGCCCUCC | m7a | Disrupted | -0.175000 | no TS | No effect |
| hsa-miR-4446-5p |
tagagAGGGAAATttaccc |
6 |
AUUUCCCU | m8a | Created | -0.191000 | -0.284000 | No effect |
| hsa-miR-513a-3p |
tagagaggGAAATTTAccc |
0 | UAAAUUUC | m8a | Created | -0.052000 | 0.046000 |
-5.720000 |
| hsa-miR-513c-3p |
tagagaggGAAATTTAccc |
0 | UAAAUUUC | m8a | Created | -0.052000 | 0.046000 |
-5.530000 |
| hsa-miR-642a-5p |
tagAGAGGGAaatttaccc |
6 |
GUCCCUCU | m7b | (m6c->m7b) | -0.189000 | -0.492000 |
-1.430000 |
| hsa-miR-874 |
tagagAGGGCAatttaccc |
2 |
CUGCCCUG | m6b | Disrupted | -0.149000 | no TS |
5.760000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr2:g.214932059G>T | COSN6937906 | 8044719 | [pancreas][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3065-3p |
catggggacGTGCTGAacc |
2 |
UCAGCACC | m7a | (m7a->m6a) | -0.089000 | no TS |
7.440000 |
| hsa-miR-545-3p |
catggggacTTGCTGAacc |
0 | UCAGCAAA | m7a | (m6a->m7a) | no TS | -0.035000 |
-0.200000 |