Identify the genes that are differentially expressed
between the two groups (8 breast cancer samples vs. 8 ovarian cancer samples)
using:
1. T-test
a. How many significant genes
can be identified using the default options? 196
(Threshold for P-value = 0.01), 74 (Threshold for P-value = 0.001)
b. What is the name of the gene
with the smallest p-value? PAX8 paired box gene 8
Hs.73149 AA405767
2. SAM
a. Set the delta value = 1.0,
how many significant genes are identified? 245.
And what is the median number of false significant genes? 5.376